miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 5' -55.5 NC_004065.1 + 30151 1.09 0.00497
Target:  5'- gCGCGGGCCGUCAACAAUCCCGAUCUCu -3'
miRNA:   3'- -GCGCCCGGCAGUUGUUAGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 146784 0.68 0.929164
Target:  5'- gGCaGGCCGacCAAgGA-CCUGAUCUCg -3'
miRNA:   3'- gCGcCCGGCa-GUUgUUaGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 46270 0.67 0.947655
Target:  5'- aCG-GGGCCaUCGGCAGaCCCGAgUUCa -3'
miRNA:   3'- -GCgCCCGGcAGUUGUUaGGGCUaGAG- -5'
15687 5' -55.5 NC_004065.1 + 67475 0.66 0.971698
Target:  5'- cCGCGGG-CGUCu-CGAUCaCCgugggGAUCUCc -3'
miRNA:   3'- -GCGCCCgGCAGuuGUUAG-GG-----CUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 83437 0.73 0.711006
Target:  5'- aGCGGGCCGcCGGgAGcgCCUGGUCUg -3'
miRNA:   3'- gCGCCCGGCaGUUgUUa-GGGCUAGAg -5'
15687 5' -55.5 NC_004065.1 + 226719 0.72 0.720676
Target:  5'- aGCGGcGCUGgcagaaGGCGAgCCCGGUCUCg -3'
miRNA:   3'- gCGCC-CGGCag----UUGUUaGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 20312 0.71 0.798251
Target:  5'- cCGCGGcagaGCCGguaggugggaauaauUCAACcg-CCCGAUCUCa -3'
miRNA:   3'- -GCGCC----CGGC---------------AGUUGuuaGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 31308 0.71 0.812041
Target:  5'- gGCGuacGCCGUCAACAGacUCCUGGcgCUCg -3'
miRNA:   3'- gCGCc--CGGCAGUUGUU--AGGGCUa-GAG- -5'
15687 5' -55.5 NC_004065.1 + 83672 0.7 0.852452
Target:  5'- uCG-GGGCCGUCGGCGGggCCGuGUCUUc -3'
miRNA:   3'- -GCgCCCGGCAGUUGUUagGGC-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 221250 0.69 0.900987
Target:  5'- uGCGGGCgGUCcuucGCAccauUCCCGaAUCUg -3'
miRNA:   3'- gCGCCCGgCAGu---UGUu---AGGGC-UAGAg -5'
15687 5' -55.5 NC_004065.1 + 65885 0.69 0.874488
Target:  5'- aGCGGGuCCGUCAGguccUCCUGGUC-Ca -3'
miRNA:   3'- gCGCCC-GGCAGUUguu-AGGGCUAGaG- -5'
15687 5' -55.5 NC_004065.1 + 92461 0.7 0.844721
Target:  5'- uGUGGGCCuGUUcGCGG-CCCGcGUCUCg -3'
miRNA:   3'- gCGCCCGG-CAGuUGUUaGGGC-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 201738 0.76 0.54332
Target:  5'- cCGCGGGCCGUCGgguCGA-CCgGgAUCUCg -3'
miRNA:   3'- -GCGCCCGGCAGUu--GUUaGGgC-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 79170 0.69 0.881431
Target:  5'- cCGac-GCCGUCGGCAGUCUCGucGUCUCc -3'
miRNA:   3'- -GCgccCGGCAGUUGUUAGGGC--UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 225477 0.73 0.671773
Target:  5'- uCGCGuGGCuCGUCAGCcgcCCCGcgCUCg -3'
miRNA:   3'- -GCGC-CCG-GCAGUUGuuaGGGCuaGAG- -5'
15687 5' -55.5 NC_004065.1 + 42925 0.7 0.843938
Target:  5'- aCGCGaGCagcuucgCGUCAGC-GUCCCGAUCUUu -3'
miRNA:   3'- -GCGCcCG-------GCAGUUGuUAGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 111912 0.69 0.900987
Target:  5'- aGCGuGGUCuggcUCAGCGAgugUCCGAUCUCc -3'
miRNA:   3'- gCGC-CCGGc---AGUUGUUa--GGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 34155 0.67 0.938858
Target:  5'- gGCGGGUa--CGGC-AUCCgCGGUCUCa -3'
miRNA:   3'- gCGCCCGgcaGUUGuUAGG-GCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 139646 0.73 0.691483
Target:  5'- gCGCGGGCCGUCG-CGA-CCCcAUCa- -3'
miRNA:   3'- -GCGCCCGGCAGUuGUUaGGGcUAGag -5'
15687 5' -55.5 NC_004065.1 + 60717 0.72 0.747345
Target:  5'- gCGCGGcagucgagagcuCCGUCGACGugGUCCuCGGUCUCg -3'
miRNA:   3'- -GCGCCc-----------GGCAGUUGU--UAGG-GCUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.