miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 5' -55.5 NC_004065.1 + 61444 0.66 0.959208
Target:  5'- cCGCGGguccuggccuacGCCGgguUCGGCGGUuccaaCCCGAUCUUc -3'
miRNA:   3'- -GCGCC------------CGGC---AGUUGUUA-----GGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 18471 0.66 0.971424
Target:  5'- gCGCGGGaggaagagccgacUUGUCGACAGUCgCGAgccguccagCUCa -3'
miRNA:   3'- -GCGCCC-------------GGCAGUUGUUAGgGCUa--------GAG- -5'
15687 5' -55.5 NC_004065.1 + 79170 0.69 0.881431
Target:  5'- cCGac-GCCGUCGGCAGUCUCGucGUCUCc -3'
miRNA:   3'- -GCgccCGGCAGUUGUUAGGGC--UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 146784 0.68 0.929164
Target:  5'- gGCaGGCCGacCAAgGA-CCUGAUCUCg -3'
miRNA:   3'- gCGcCCGGCa-GUUgUUaGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 24820 0.66 0.959208
Target:  5'- gCGCGGaCCG-C-GCGAUCCCGAcgaggggcucgUCUCc -3'
miRNA:   3'- -GCGCCcGGCaGuUGUUAGGGCU-----------AGAG- -5'
15687 5' -55.5 NC_004065.1 + 83672 0.7 0.852452
Target:  5'- uCG-GGGCCGUCGGCGGggCCGuGUCUUc -3'
miRNA:   3'- -GCgCCCGGCAGUUGUUagGGC-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 50339 0.66 0.968874
Target:  5'- aCGCGuGGCCaccgCcGCGAUCCCGAg--- -3'
miRNA:   3'- -GCGC-CCGGca--GuUGUUAGGGCUagag -5'
15687 5' -55.5 NC_004065.1 + 1778 0.69 0.900987
Target:  5'- uCGUGuaUCGgaugCGACAAUCCCGGUCUg -3'
miRNA:   3'- -GCGCccGGCa---GUUGUUAGGGCUAGAg -5'
15687 5' -55.5 NC_004065.1 + 124648 0.75 0.592322
Target:  5'- uCGCcGGCCGUCAGCgAGUCCgGGUC-Cg -3'
miRNA:   3'- -GCGcCCGGCAGUUG-UUAGGgCUAGaG- -5'
15687 5' -55.5 NC_004065.1 + 92036 0.69 0.881431
Target:  5'- cCGCGGGCUcUUGGCGcgCUCGAggcaUCUCa -3'
miRNA:   3'- -GCGCCCGGcAGUUGUuaGGGCU----AGAG- -5'
15687 5' -55.5 NC_004065.1 + 188309 0.69 0.874488
Target:  5'- -aCGGGgCGUaCGACGGUCCUGuuuUCUCu -3'
miRNA:   3'- gcGCCCgGCA-GUUGUUAGGGCu--AGAG- -5'
15687 5' -55.5 NC_004065.1 + 110296 0.69 0.874488
Target:  5'- gCGCGacccGGCCGUC-ACGGUCUCGcagCUCu -3'
miRNA:   3'- -GCGC----CCGGCAGuUGUUAGGGCua-GAG- -5'
15687 5' -55.5 NC_004065.1 + 151088 0.71 0.776896
Target:  5'- gCGCGGGCC-UgGugGcgCCCGAgCUCg -3'
miRNA:   3'- -GCGCCCGGcAgUugUuaGGGCUaGAG- -5'
15687 5' -55.5 NC_004065.1 + 215029 0.66 0.959208
Target:  5'- --aGGGCCGUCAcccACGAgcUCCCucacGGUCUg -3'
miRNA:   3'- gcgCCCGGCAGU---UGUU--AGGG----CUAGAg -5'
15687 5' -55.5 NC_004065.1 + 192237 0.66 0.959208
Target:  5'- uCGuCGGuuCCGUCGACcuuuAUUCUGAUCUCu -3'
miRNA:   3'- -GC-GCCc-GGCAGUUGu---UAGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 152521 0.66 0.962633
Target:  5'- aGCaGGCCGUCuACGccuauUCCCucAUCUCg -3'
miRNA:   3'- gCGcCCGGCAGuUGUu----AGGGc-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 22909 0.72 0.758556
Target:  5'- aCGCGGucaguggcgGCgGUCGGCGGUUCCG-UCUCg -3'
miRNA:   3'- -GCGCC---------CGgCAGUUGUUAGGGCuAGAG- -5'
15687 5' -55.5 NC_004065.1 + 25593 0.66 0.968874
Target:  5'- gGCGG-CUGagCAGCAGg-CCGAUCUCg -3'
miRNA:   3'- gCGCCcGGCa-GUUGUUagGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 195499 0.66 0.968874
Target:  5'- uCGCGGGagcccgCGUCAGagcgCCCGGUCcCg -3'
miRNA:   3'- -GCGCCCg-----GCAGUUguuaGGGCUAGaG- -5'
15687 5' -55.5 NC_004065.1 + 124312 0.66 0.968874
Target:  5'- aCGCGGaugucgugguucGCCGUCGccgcCAGUCCCgGGUC-Cg -3'
miRNA:   3'- -GCGCC------------CGGCAGUu---GUUAGGG-CUAGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.