miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 5' -55.5 NC_004065.1 + 197376 0.79 0.366372
Target:  5'- cCGCGGGCCGUgGcgauguugacagGCAGUCCCGGUgaCg -3'
miRNA:   3'- -GCGCCCGGCAgU------------UGUUAGGGCUAgaG- -5'
15687 5' -55.5 NC_004065.1 + 92036 0.69 0.881431
Target:  5'- cCGCGGGCUcUUGGCGcgCUCGAggcaUCUCa -3'
miRNA:   3'- -GCGCCCGGcAGUUGUuaGGGCU----AGAG- -5'
15687 5' -55.5 NC_004065.1 + 1778 0.69 0.900987
Target:  5'- uCGUGuaUCGgaugCGACAAUCCCGGUCUg -3'
miRNA:   3'- -GCGCccGGCa---GUUGUUAGGGCUAGAg -5'
15687 5' -55.5 NC_004065.1 + 17787 0.68 0.912931
Target:  5'- aGCGgguGGCCGUCGcguuuggcGCGAUCCCGcgUgaUCa -3'
miRNA:   3'- gCGC---CCGGCAGU--------UGUUAGGGCuaG--AG- -5'
15687 5' -55.5 NC_004065.1 + 124312 0.66 0.968874
Target:  5'- aCGCGGaugucgugguucGCCGUCGccgcCAGUCCCgGGUC-Cg -3'
miRNA:   3'- -GCGCC------------CGGCAGUu---GUUAGGG-CUAGaG- -5'
15687 5' -55.5 NC_004065.1 + 50339 0.66 0.968874
Target:  5'- aCGCGuGGCCaccgCcGCGAUCCCGAg--- -3'
miRNA:   3'- -GCGC-CCGGca--GuUGUUAGGGCUagag -5'
15687 5' -55.5 NC_004065.1 + 25593 0.66 0.968874
Target:  5'- gGCGG-CUGagCAGCAGg-CCGAUCUCg -3'
miRNA:   3'- gCGCCcGGCa-GUUGUUagGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 152521 0.66 0.962633
Target:  5'- aGCaGGCCGUCuACGccuauUCCCucAUCUCg -3'
miRNA:   3'- gCGcCCGGCAGuUGUu----AGGGc-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 192237 0.66 0.959208
Target:  5'- uCGuCGGuuCCGUCGACcuuuAUUCUGAUCUCu -3'
miRNA:   3'- -GC-GCCc-GGCAGUUGu---UAGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 215029 0.66 0.959208
Target:  5'- --aGGGCCGUCAcccACGAgcUCCCucacGGUCUg -3'
miRNA:   3'- gcgCCCGGCAGU---UGUU--AGGG----CUAGAg -5'
15687 5' -55.5 NC_004065.1 + 190168 0.67 0.951722
Target:  5'- aCGCGGGUgcaGuUCGAUGAUCagauCGAUCUCc -3'
miRNA:   3'- -GCGCCCGg--C-AGUUGUUAGg---GCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 58604 0.67 0.934124
Target:  5'- gGCGGaGUCGagaUCGACGcgcgcggcggaGUCgCCGGUCUCg -3'
miRNA:   3'- gCGCC-CGGC---AGUUGU-----------UAG-GGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 145178 0.68 0.929164
Target:  5'- aCGUGGGagagCGUCAugAcgCCCGcUUUCg -3'
miRNA:   3'- -GCGCCCg---GCAGUugUuaGGGCuAGAG- -5'
15687 5' -55.5 NC_004065.1 + 55652 0.68 0.923979
Target:  5'- aGaCGGGCUcgaGUCGGCAcuggCCGGUCUCg -3'
miRNA:   3'- gC-GCCCGG---CAGUUGUuag-GGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 94845 0.68 0.923448
Target:  5'- cCGCuuagGGGCUGUCAAUcaucuuaGGUCCCGAagagccCUCa -3'
miRNA:   3'- -GCG----CCCGGCAGUUG-------UUAGGGCUa-----GAG- -5'
15687 5' -55.5 NC_004065.1 + 169120 0.82 0.250311
Target:  5'- aCGCGGGCCGcggcCAGCAGuUCCCGAgacgCUCg -3'
miRNA:   3'- -GCGCCCGGCa---GUUGUU-AGGGCUa---GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.