miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 139633 0.66 0.994441
Target:  5'- -cGACcCcAUCAGACCGCGUcguCGGUg -3'
miRNA:   3'- auUUGaGaUGGUCUGGCGCAu--GCCGg -5'
15688 3' -52.7 NC_004065.1 + 223851 0.66 0.994441
Target:  5'- -cAACUCgUACUcGGCCGCc--CGGCCc -3'
miRNA:   3'- auUUGAG-AUGGuCUGGCGcauGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 198545 0.66 0.994441
Target:  5'- -cAGCcgC-ACCAGGuCCGCGcGCGGCa -3'
miRNA:   3'- auUUGa-GaUGGUCU-GGCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 159123 0.66 0.994441
Target:  5'- cAGACcCUuauuucgguaACguGACCGCGU-CGGUCa -3'
miRNA:   3'- aUUUGaGA----------UGguCUGGCGCAuGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 119442 0.66 0.994441
Target:  5'- --cGC-CU-CCAGACuCGCucACGGCCa -3'
miRNA:   3'- auuUGaGAuGGUCUG-GCGcaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 169184 0.66 0.994441
Target:  5'- --uGCUCUGCgucgcgUAcGCCGUG-ACGGCCg -3'
miRNA:   3'- auuUGAGAUG------GUcUGGCGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 218028 0.66 0.994441
Target:  5'- aAGAC-C-ACUaAGACCGCGacgaucGCGGCCa -3'
miRNA:   3'- aUUUGaGaUGG-UCUGGCGCa-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 141329 0.66 0.994441
Target:  5'- -uAGCUg-GCCAGGcCCGCGUAguGCCa -3'
miRNA:   3'- auUUGAgaUGGUCU-GGCGCAUgcCGG- -5'
15688 3' -52.7 NC_004065.1 + 226900 0.66 0.994441
Target:  5'- aGAACagUugCAGAgUGCGUGUGGCa -3'
miRNA:   3'- aUUUGagAugGUCUgGCGCAUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 105911 0.66 0.994361
Target:  5'- gGAugUggGCCGGAaagagcaacgccaCCGCGUGCGGg- -3'
miRNA:   3'- aUUugAgaUGGUCU-------------GGCGCAUGCCgg -5'
15688 3' -52.7 NC_004065.1 + 121840 0.66 0.993594
Target:  5'- cAAAUUCcuCCAGACCGgGaucCGGCUg -3'
miRNA:   3'- aUUUGAGauGGUCUGGCgCau-GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 151983 0.66 0.993594
Target:  5'- -cGGCUCUcgaggGCCucGGACUGCGUG-GGCg -3'
miRNA:   3'- auUUGAGA-----UGG--UCUGGCGCAUgCCGg -5'
15688 3' -52.7 NC_004065.1 + 193754 0.66 0.993594
Target:  5'- -cGGCUCUGCC-GACCGagaGaugAUGGCg -3'
miRNA:   3'- auUUGAGAUGGuCUGGCg--Ca--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 16324 0.66 0.993594
Target:  5'- cGAACUCgACCugcgauuuucAGACCcUGUuCGGCCg -3'
miRNA:   3'- aUUUGAGaUGG----------UCUGGcGCAuGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 198463 0.66 0.993594
Target:  5'- gGGGC-CUGCCGGA-CGCGgaguucAgGGCCg -3'
miRNA:   3'- aUUUGaGAUGGUCUgGCGCa-----UgCCGG- -5'
15688 3' -52.7 NC_004065.1 + 60834 0.66 0.993594
Target:  5'- aGAACaUCgggcGCCccGCCGUGUGCGGaCCc -3'
miRNA:   3'- aUUUG-AGa---UGGucUGGCGCAUGCC-GG- -5'
15688 3' -52.7 NC_004065.1 + 128179 0.66 0.992645
Target:  5'- cGGGCggCgaugGCCGGACCGagGUgcGCGGUCa -3'
miRNA:   3'- aUUUGa-Ga---UGGUCUGGCg-CA--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 149699 0.66 0.992645
Target:  5'- gUGAACgccgggggGCCGcGGCCGCGc-CGGCCc -3'
miRNA:   3'- -AUUUGaga-----UGGU-CUGGCGCauGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 128876 0.66 0.992645
Target:  5'- ---cCUCgu-CAGACauCGUGCGGCCg -3'
miRNA:   3'- auuuGAGaugGUCUGgcGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 128996 0.66 0.992645
Target:  5'- --uGCcgCUGCCGacGGCUGCcucgGCGGCCa -3'
miRNA:   3'- auuUGa-GAUGGU--CUGGCGca--UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.