miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 193754 0.66 0.993594
Target:  5'- -cGGCUCUGCC-GACCGagaGaugAUGGCg -3'
miRNA:   3'- auUUGAGAUGGuCUGGCg--Ca--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 26186 0.66 0.991588
Target:  5'- gAAACUCUuccucuucGCCGGcgggaACCuGCGcAUGGCCu -3'
miRNA:   3'- aUUUGAGA--------UGGUC-----UGG-CGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 66404 0.66 0.991588
Target:  5'- --cGCUCgGCCAGcuggcGCCG-GUccGCGGCCc -3'
miRNA:   3'- auuUGAGaUGGUC-----UGGCgCA--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 173365 0.66 0.989116
Target:  5'- -uGACgUCUACC-GAUCuccucaCGUACGGCCu -3'
miRNA:   3'- auUUG-AGAUGGuCUGGc-----GCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 198545 0.66 0.994441
Target:  5'- -cAGCcgC-ACCAGGuCCGCGcGCGGCa -3'
miRNA:   3'- auUUGa-GaUGGUCU-GGCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 149699 0.66 0.992645
Target:  5'- gUGAACgccgggggGCCGcGGCCGCGc-CGGCCc -3'
miRNA:   3'- -AUUUGaga-----UGGU-CUGGCGCauGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 39043 0.66 0.989116
Target:  5'- gGGGCUCUgcgggcGCCAGACCGUcagccCGGUg -3'
miRNA:   3'- aUUUGAGA------UGGUCUGGCGcau--GCCGg -5'
15688 3' -52.7 NC_004065.1 + 133358 0.66 0.989116
Target:  5'- aAAAC-CUGCCucacuuACCGuCGcGCGGCCg -3'
miRNA:   3'- aUUUGaGAUGGuc----UGGC-GCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 105911 0.66 0.994361
Target:  5'- gGAugUggGCCGGAaagagcaacgccaCCGCGUGCGGg- -3'
miRNA:   3'- aUUugAgaUGGUCU-------------GGCGCAUGCCgg -5'
15688 3' -52.7 NC_004065.1 + 119442 0.66 0.994441
Target:  5'- --cGC-CU-CCAGACuCGCucACGGCCa -3'
miRNA:   3'- auuUGaGAuGGUCUG-GCGcaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 128876 0.66 0.992645
Target:  5'- ---cCUCgu-CAGACauCGUGCGGCCg -3'
miRNA:   3'- auuuGAGaugGUCUGgcGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 113411 0.66 0.989116
Target:  5'- -cGACgUCgugGCCAGggaGCUGCGcagagcgGCGGCCg -3'
miRNA:   3'- auUUG-AGa--UGGUC---UGGCGCa------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 218028 0.66 0.994441
Target:  5'- aAGAC-C-ACUaAGACCGCGacgaucGCGGCCa -3'
miRNA:   3'- aUUUGaGaUGG-UCUGGCGCa-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 91885 0.66 0.989116
Target:  5'- aUAGAC-CUgACCGucGACCGCGacuucUGCGGCg -3'
miRNA:   3'- -AUUUGaGA-UGGU--CUGGCGC-----AUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 211609 0.66 0.989116
Target:  5'- cUGGACgaagGCCGGACCGUGUucauCGGaCa -3'
miRNA:   3'- -AUUUGaga-UGGUCUGGCGCAu---GCCgG- -5'
15688 3' -52.7 NC_004065.1 + 49036 0.66 0.989116
Target:  5'- -cAugUCgacgaGCCGGACCGaaacccCGUcCGGCCa -3'
miRNA:   3'- auUugAGa----UGGUCUGGC------GCAuGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 196539 0.66 0.991588
Target:  5'- aAGACgcCUGCCGG--CGCGUaggcgcccACGGCCg -3'
miRNA:   3'- aUUUGa-GAUGGUCugGCGCA--------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 223851 0.66 0.994441
Target:  5'- -cAACUCgUACUcGGCCGCc--CGGCCc -3'
miRNA:   3'- auUUGAG-AUGGuCUGGCGcauGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 62686 0.66 0.991588
Target:  5'- ----gUCUGCC--GCCGCGUuggucGCGGUCu -3'
miRNA:   3'- auuugAGAUGGucUGGCGCA-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 47363 0.66 0.991476
Target:  5'- ------gUGCCAGACCGUacuccacaguccaGcGCGGCCg -3'
miRNA:   3'- auuugagAUGGUCUGGCG-------------CaUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.