miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 211609 0.66 0.989116
Target:  5'- cUGGACgaagGCCGGACCGUGUucauCGGaCa -3'
miRNA:   3'- -AUUUGaga-UGGUCUGGCGCAu---GCCgG- -5'
15688 3' -52.7 NC_004065.1 + 49036 0.66 0.989116
Target:  5'- -cAugUCgacgaGCCGGACCGaaacccCGUcCGGCCa -3'
miRNA:   3'- auUugAGa----UGGUCUGGC------GCAuGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 128876 0.66 0.992645
Target:  5'- ---cCUCgu-CAGACauCGUGCGGCCg -3'
miRNA:   3'- auuuGAGaugGUCUGgcGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 196539 0.66 0.991588
Target:  5'- aAGACgcCUGCCGG--CGCGUaggcgcccACGGCCg -3'
miRNA:   3'- aUUUGa-GAUGGUCugGCGCA--------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 113411 0.66 0.989116
Target:  5'- -cGACgUCgugGCCAGggaGCUGCGcagagcgGCGGCCg -3'
miRNA:   3'- auUUG-AGa--UGGUC---UGGCGCa------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 128179 0.66 0.992645
Target:  5'- cGGGCggCgaugGCCGGACCGagGUgcGCGGUCa -3'
miRNA:   3'- aUUUGa-Ga---UGGUCUGGCg-CA--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 16324 0.66 0.993594
Target:  5'- cGAACUCgACCugcgauuuucAGACCcUGUuCGGCCg -3'
miRNA:   3'- aUUUGAGaUGG----------UCUGGcGCAuGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 159123 0.66 0.994441
Target:  5'- cAGACcCUuauuucgguaACguGACCGCGU-CGGUCa -3'
miRNA:   3'- aUUUGaGA----------UGguCUGGCGCAuGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 62686 0.66 0.991588
Target:  5'- ----gUCUGCC--GCCGCGUuggucGCGGUCu -3'
miRNA:   3'- auuugAGAUGGucUGGCGCA-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 134211 0.66 0.989116
Target:  5'- aUAGGCU-UGCCcGuCCGCGggucuCGGCCg -3'
miRNA:   3'- -AUUUGAgAUGGuCuGGCGCau---GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 169184 0.66 0.994441
Target:  5'- --uGCUCUGCgucgcgUAcGCCGUG-ACGGCCg -3'
miRNA:   3'- auuUGAGAUG------GUcUGGCGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 149699 0.66 0.992645
Target:  5'- gUGAACgccgggggGCCGcGGCCGCGc-CGGCCc -3'
miRNA:   3'- -AUUUGaga-----UGGU-CUGGCGCauGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 66404 0.66 0.991588
Target:  5'- --cGCUCgGCCAGcuggcGCCG-GUccGCGGCCc -3'
miRNA:   3'- auuUGAGaUGGUC-----UGGCgCA--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 226900 0.66 0.994441
Target:  5'- aGAACagUugCAGAgUGCGUGUGGCa -3'
miRNA:   3'- aUUUGagAugGUCUgGCGCAUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 13224 0.67 0.986112
Target:  5'- aUAAACUCUAgCGG-UUGCGgauUGCGGCa -3'
miRNA:   3'- -AUUUGAGAUgGUCuGGCGC---AUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 192301 0.67 0.982509
Target:  5'- -uAAC-CUGCCGGGuuGCGUACG-UCa -3'
miRNA:   3'- auUUGaGAUGGUCUggCGCAUGCcGG- -5'
15688 3' -52.7 NC_004065.1 + 90957 0.67 0.986112
Target:  5'- ---cCUCUACCAGACgcggauCGUGUuCGuGCCc -3'
miRNA:   3'- auuuGAGAUGGUCUG------GCGCAuGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 169835 0.67 0.982509
Target:  5'- cGAAC-CgGCCGGAgCCGCGacaGCGGCa -3'
miRNA:   3'- aUUUGaGaUGGUCU-GGCGCa--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 208511 0.67 0.984389
Target:  5'- ---gUUCcACCuGACCGCGUuccguCGGCUc -3'
miRNA:   3'- auuuGAGaUGGuCUGGCGCAu----GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 59894 0.67 0.984389
Target:  5'- gAGAC-CgGCUGGACCGUGUcgaccgacGCGGUCa -3'
miRNA:   3'- aUUUGaGaUGGUCUGGCGCA--------UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.