miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 6531 0.68 0.978245
Target:  5'- uUGAuCUUUACCGu-CCGCGgggaugcggACGGCCg -3'
miRNA:   3'- -AUUuGAGAUGGUcuGGCGCa--------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 37898 0.68 0.96749
Target:  5'- aUAGACUCUGC--GGCCGUGUccaggACGGUg -3'
miRNA:   3'- -AUUUGAGAUGguCUGGCGCA-----UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 121083 0.68 0.978245
Target:  5'- -----gCUACUucucgaGGGCCGCGUACgcgGGCCu -3'
miRNA:   3'- auuugaGAUGG------UCUGGCGCAUG---CCGG- -5'
15688 3' -52.7 NC_004065.1 + 188266 0.68 0.971611
Target:  5'- -cGugUCUACCgucgcGGACCuccgcgagccauguuGCGcGCGGCCg -3'
miRNA:   3'- auUugAGAUGG-----UCUGG---------------CGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 132152 0.68 0.96749
Target:  5'- -cAACUCgaACCAGGCgGCG-GCGGUg -3'
miRNA:   3'- auUUGAGa-UGGUCUGgCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 185233 0.68 0.978245
Target:  5'- ---gUUCaUugUGGACgGUGUGCGGCCc -3'
miRNA:   3'- auuuGAG-AugGUCUGgCGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 114171 0.68 0.975845
Target:  5'- gGGACUCUGa-GGAgCGCGccgcCGGCCg -3'
miRNA:   3'- aUUUGAGAUggUCUgGCGCau--GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 126124 0.68 0.975845
Target:  5'- cGAGCUCUGCUGGAU-GCGgucgGCGuGCUg -3'
miRNA:   3'- aUUUGAGAUGGUCUGgCGCa---UGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 78470 0.68 0.973257
Target:  5'- aUGAugUCU-CCGcGCCGCGUcaaGCGcGCCc -3'
miRNA:   3'- -AUUugAGAuGGUcUGGCGCA---UGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 76664 0.68 0.970474
Target:  5'- -cGGCUCgaaaCGGAUCGCGU-CGGCg -3'
miRNA:   3'- auUUGAGaug-GUCUGGCGCAuGCCGg -5'
15688 3' -52.7 NC_004065.1 + 221685 0.68 0.96749
Target:  5'- ---uCUCUuugucaccGCCGGAUCGCGauccguuCGGCCg -3'
miRNA:   3'- auuuGAGA--------UGGUCUGGCGCau-----GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 201012 0.68 0.96749
Target:  5'- -uGACUCg---AGGCCGCGUGCGcGCg -3'
miRNA:   3'- auUUGAGauggUCUGGCGCAUGC-CGg -5'
15688 3' -52.7 NC_004065.1 + 135886 0.68 0.96749
Target:  5'- cGAGCUgUcggcugguggcGCCguAGAcCCGCGUgACGGCCg -3'
miRNA:   3'- aUUUGAgA-----------UGG--UCU-GGCGCA-UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 135928 0.68 0.970474
Target:  5'- aGAAcCUCUGCgCGagccccccGACgCGCGuUACGGCCg -3'
miRNA:   3'- aUUU-GAGAUG-GU--------CUG-GCGC-AUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 182564 0.69 0.964297
Target:  5'- -uGGCUCUcuagcuCCAuACUGCGUACGGUg -3'
miRNA:   3'- auUUGAGAu-----GGUcUGGCGCAUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 114382 0.69 0.964297
Target:  5'- --uACUCUGCggcucgGGGCCGuCGU-CGGCCu -3'
miRNA:   3'- auuUGAGAUGg-----UCUGGC-GCAuGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 135702 0.69 0.94935
Target:  5'- gUGAAuCUCUacGCCGGGCUGCGgGCGGg- -3'
miRNA:   3'- -AUUU-GAGA--UGGUCUGGCGCaUGCCgg -5'
15688 3' -52.7 NC_004065.1 + 114109 0.69 0.957269
Target:  5'- cGAGCUgCcgGCCgAGGCCGaCG-ACGGCCc -3'
miRNA:   3'- aUUUGA-Ga-UGG-UCUGGC-GCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 138306 0.69 0.964297
Target:  5'- gUGGACgcgGCCcuGAUCGCGUGCgaGGCCu -3'
miRNA:   3'- -AUUUGagaUGGu-CUGGCGCAUG--CCGG- -5'
15688 3' -52.7 NC_004065.1 + 196829 0.69 0.957269
Target:  5'- -cGACUgugCUGCUucuGGCaCGCGUucGCGGCCg -3'
miRNA:   3'- auUUGA---GAUGGu--CUG-GCGCA--UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.