miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 30648 1.11 0.006324
Target:  5'- uUAAACUCUACCAGACCGCGUACGGCCg -3'
miRNA:   3'- -AUUUGAGAUGGUCUGGCGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 118152 0.77 0.626309
Target:  5'- aUGGAUUgUcACCgAGACCGCGgcgGCGGCCg -3'
miRNA:   3'- -AUUUGAgA-UGG-UCUGGCGCa--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 125868 0.77 0.633446
Target:  5'- ---cUUCUACCAGgcgcgcaucgacccGCCGCGcACGGCCa -3'
miRNA:   3'- auuuGAGAUGGUC--------------UGGCGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 108267 0.75 0.736896
Target:  5'- ---cCUCUaACCAGACgGUGUcucacGCGGCCa -3'
miRNA:   3'- auuuGAGA-UGGUCUGgCGCA-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 185188 0.75 0.736896
Target:  5'- gGAGCUCUG-CAGACCGUcuccCGGCCg -3'
miRNA:   3'- aUUUGAGAUgGUCUGGCGcau-GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 194545 0.75 0.707319
Target:  5'- -cGACUCggcGCCAGAUCGCGguugcaggACGGCg -3'
miRNA:   3'- auUUGAGa--UGGUCUGGCGCa-------UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 196114 0.75 0.707319
Target:  5'- cAGACUCUG-CAGACCGUGaguugACGGCg -3'
miRNA:   3'- aUUUGAGAUgGUCUGGCGCa----UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 110556 0.74 0.765658
Target:  5'- aGAGCU--GCgAGACCGUG-ACGGCCg -3'
miRNA:   3'- aUUUGAgaUGgUCUGGCGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 109422 0.73 0.811122
Target:  5'- -uGGCUCUacaACCAG-CCGCGcugGCGGCg -3'
miRNA:   3'- auUUGAGA---UGGUCuGGCGCa--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 19679 0.73 0.836536
Target:  5'- -uGGCguaUGCCGGGCCGgGUaACGGCUg -3'
miRNA:   3'- auUUGag-AUGGUCUGGCgCA-UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 26411 0.72 0.852569
Target:  5'- -cAACUCcGCCAcGGCgGCG-GCGGCCu -3'
miRNA:   3'- auUUGAGaUGGU-CUGgCGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 43418 0.72 0.851786
Target:  5'- cGGugUCUGCCGuucccgccguccGugCGCGUgucuuccGCGGCCg -3'
miRNA:   3'- aUUugAGAUGGU------------CugGCGCA-------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 225529 0.72 0.867809
Target:  5'- ----gUC-GCCAGGCUaCGUGCGGCCa -3'
miRNA:   3'- auuugAGaUGGUCUGGcGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 200428 0.72 0.867809
Target:  5'- cGAAgUcCUGCaGGACCGCGgucaccGCGGCCg -3'
miRNA:   3'- aUUUgA-GAUGgUCUGGCGCa-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 93340 0.71 0.908335
Target:  5'- aAAGCUCgaGCCGGcCCGCcgcCGGCCa -3'
miRNA:   3'- aUUUGAGa-UGGUCuGGCGcauGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 60115 0.71 0.889081
Target:  5'- gAAGCg--GCCGG-CCGCGUACaGGCUc -3'
miRNA:   3'- aUUUGagaUGGUCuGGCGCAUG-CCGG- -5'
15688 3' -52.7 NC_004065.1 + 143201 0.71 0.916605
Target:  5'- --cGCUCUACCuagaucuguuccucaAGGCCGCGUucgcCGcGCCc -3'
miRNA:   3'- auuUGAGAUGG---------------UCUGGCGCAu---GC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 90909 0.71 0.889081
Target:  5'- cGAGCUCggAgCAGACCGCGU-CGaCCg -3'
miRNA:   3'- aUUUGAGa-UgGUCUGGCGCAuGCcGG- -5'
15688 3' -52.7 NC_004065.1 + 152288 0.71 0.902147
Target:  5'- gGAGCUCgcCCAGucCUGCGgcgGCGGCg -3'
miRNA:   3'- aUUUGAGauGGUCu-GGCGCa--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 49929 0.71 0.914289
Target:  5'- uUGAGCUCUACCGaACCGCG-ACcGUCc -3'
miRNA:   3'- -AUUUGAGAUGGUcUGGCGCaUGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.