miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 6531 0.68 0.978245
Target:  5'- uUGAuCUUUACCGu-CCGCGgggaugcggACGGCCg -3'
miRNA:   3'- -AUUuGAGAUGGUcuGGCGCa--------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 135928 0.68 0.970474
Target:  5'- aGAAcCUCUGCgCGagccccccGACgCGCGuUACGGCCg -3'
miRNA:   3'- aUUU-GAGAUG-GU--------CUG-GCGC-AUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 37898 0.68 0.96749
Target:  5'- aUAGACUCUGC--GGCCGUGUccaggACGGUg -3'
miRNA:   3'- -AUUUGAGAUGguCUGGCGCA-----UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 132152 0.68 0.96749
Target:  5'- -cAACUCgaACCAGGCgGCG-GCGGUg -3'
miRNA:   3'- auUUGAGa-UGGUCUGgCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 121194 0.67 0.985611
Target:  5'- cAGGCUC-ACCgAGgccgucagccuguuGCCGCGgcugaACGGCCg -3'
miRNA:   3'- aUUUGAGaUGG-UC--------------UGGCGCa----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 202172 0.67 0.980464
Target:  5'- ---uCUCgACCAGuucgccCCGCGgcaccACGGCCa -3'
miRNA:   3'- auuuGAGaUGGUCu-----GGCGCa----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 92200 0.67 0.980464
Target:  5'- gAAACgagACgCGGGCCGCGaACaGGCCc -3'
miRNA:   3'- aUUUGagaUG-GUCUGGCGCaUG-CCGG- -5'
15688 3' -52.7 NC_004065.1 + 100552 0.67 0.982509
Target:  5'- ---uCUCUGCCgccgcuGGugCGCuUGCGGCUu -3'
miRNA:   3'- auuuGAGAUGG------UCugGCGcAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 125284 0.67 0.980464
Target:  5'- gAGACUCUAUCAGGuagaacagcuCCGgGUACuGGUg -3'
miRNA:   3'- aUUUGAGAUGGUCU----------GGCgCAUG-CCGg -5'
15688 3' -52.7 NC_004065.1 + 68739 0.67 0.982509
Target:  5'- -uGACggggucgCUGCCGGACUcggacaucgcgGCGgugcugGCGGCCu -3'
miRNA:   3'- auUUGa------GAUGGUCUGG-----------CGCa-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 169590 0.67 0.982509
Target:  5'- -cGGCUCcgGCCGGuuCGCGgg-GGCCg -3'
miRNA:   3'- auUUGAGa-UGGUCugGCGCaugCCGG- -5'
15688 3' -52.7 NC_004065.1 + 115328 0.67 0.980464
Target:  5'- aGAGC-CgACCgAGGCCGCGUccucgcGCGcGCCg -3'
miRNA:   3'- aUUUGaGaUGG-UCUGGCGCA------UGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 197982 0.67 0.987684
Target:  5'- uUGAACuUCUGCuCGGGCCa-GUGCGGgCa -3'
miRNA:   3'- -AUUUG-AGAUG-GUCUGGcgCAUGCCgG- -5'
15688 3' -52.7 NC_004065.1 + 89345 0.67 0.987684
Target:  5'- aGAACUCgagGCacgaCAGGCCGCa---GGCCg -3'
miRNA:   3'- aUUUGAGa--UG----GUCUGGCGcaugCCGG- -5'
15688 3' -52.7 NC_004065.1 + 147455 0.67 0.987684
Target:  5'- cGAGUUCUGCgGGAuCCaCGUcuGCGGCCg -3'
miRNA:   3'- aUUUGAGAUGgUCU-GGcGCA--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 221271 0.67 0.986112
Target:  5'- aUGAACcCUGCC--GCCGCcaccACGGCCu -3'
miRNA:   3'- -AUUUGaGAUGGucUGGCGca--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 77485 0.67 0.980464
Target:  5'- gGAACUCggugGCCAcGAUCaGCGU--GGCCa -3'
miRNA:   3'- aUUUGAGa---UGGU-CUGG-CGCAugCCGG- -5'
15688 3' -52.7 NC_004065.1 + 148554 0.67 0.985097
Target:  5'- -cAGCUCUugCAGAucauccgggucagccCCGUGcGgGGCCu -3'
miRNA:   3'- auUUGAGAugGUCU---------------GGCGCaUgCCGG- -5'
15688 3' -52.7 NC_004065.1 + 207494 0.67 0.984389
Target:  5'- -cAGCUCguCCAGACuCGCGgcgcgauaGCGGUCg -3'
miRNA:   3'- auUUGAGauGGUCUG-GCGCa-------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 107259 0.67 0.982509
Target:  5'- aGAACUCgACCGuGuCgCGCGUGaugaGGCCg -3'
miRNA:   3'- aUUUGAGaUGGU-CuG-GCGCAUg---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.