Results 81 - 100 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15688 | 3' | -52.7 | NC_004065.1 | + | 41766 | 0.67 | 0.987684 |
Target: 5'- -cGACUCUgGCgGGACCGCccGCGcGCUc -3' miRNA: 3'- auUUGAGA-UGgUCUGGCGcaUGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 13224 | 0.67 | 0.986112 |
Target: 5'- aUAAACUCUAgCGG-UUGCGgauUGCGGCa -3' miRNA: 3'- -AUUUGAGAUgGUCuGGCGC---AUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 197982 | 0.67 | 0.987684 |
Target: 5'- uUGAACuUCUGCuCGGGCCa-GUGCGGgCa -3' miRNA: 3'- -AUUUG-AGAUG-GUCUGGcgCAUGCCgG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 89345 | 0.67 | 0.987684 |
Target: 5'- aGAACUCgagGCacgaCAGGCCGCa---GGCCg -3' miRNA: 3'- aUUUGAGa--UG----GUCUGGCGcaugCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 147455 | 0.67 | 0.987684 |
Target: 5'- cGAGUUCUGCgGGAuCCaCGUcuGCGGCCg -3' miRNA: 3'- aUUUGAGAUGgUCU-GGcGCA--UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 121194 | 0.67 | 0.985611 |
Target: 5'- cAGGCUC-ACCgAGgccgucagccuguuGCCGCGgcugaACGGCCg -3' miRNA: 3'- aUUUGAGaUGG-UC--------------UGGCGCa----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 192301 | 0.67 | 0.982509 |
Target: 5'- -uAAC-CUGCCGGGuuGCGUACG-UCa -3' miRNA: 3'- auUUGaGAUGGUCUggCGCAUGCcGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 169590 | 0.67 | 0.982509 |
Target: 5'- -cGGCUCcgGCCGGuuCGCGgg-GGCCg -3' miRNA: 3'- auUUGAGa-UGGUCugGCGCaugCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 107259 | 0.67 | 0.982509 |
Target: 5'- aGAACUCgACCGuGuCgCGCGUGaugaGGCCg -3' miRNA: 3'- aUUUGAGaUGGU-CuG-GCGCAUg---CCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 148554 | 0.67 | 0.985097 |
Target: 5'- -cAGCUCUugCAGAucauccgggucagccCCGUGcGgGGCCu -3' miRNA: 3'- auUUGAGAugGUCU---------------GGCGCaUgCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 223851 | 0.66 | 0.994441 |
Target: 5'- -cAACUCgUACUcGGCCGCc--CGGCCc -3' miRNA: 3'- auUUGAG-AUGGuCUGGCGcauGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 105911 | 0.66 | 0.994361 |
Target: 5'- gGAugUggGCCGGAaagagcaacgccaCCGCGUGCGGg- -3' miRNA: 3'- aUUugAgaUGGUCU-------------GGCGCAUGCCgg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 193754 | 0.66 | 0.993594 |
Target: 5'- -cGGCUCUGCC-GACCGagaGaugAUGGCg -3' miRNA: 3'- auUUGAGAUGGuCUGGCg--Ca--UGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 149699 | 0.66 | 0.992645 |
Target: 5'- gUGAACgccgggggGCCGcGGCCGCGc-CGGCCc -3' miRNA: 3'- -AUUUGaga-----UGGU-CUGGCGCauGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 198545 | 0.66 | 0.994441 |
Target: 5'- -cAGCcgC-ACCAGGuCCGCGcGCGGCa -3' miRNA: 3'- auUUGa-GaUGGUCU-GGCGCaUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 196539 | 0.66 | 0.991588 |
Target: 5'- aAGACgcCUGCCGG--CGCGUaggcgcccACGGCCg -3' miRNA: 3'- aUUUGa-GAUGGUCugGCGCA--------UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 128876 | 0.66 | 0.992645 |
Target: 5'- ---cCUCgu-CAGACauCGUGCGGCCg -3' miRNA: 3'- auuuGAGaugGUCUGgcGCAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 62686 | 0.66 | 0.991588 |
Target: 5'- ----gUCUGCC--GCCGCGUuggucGCGGUCu -3' miRNA: 3'- auuugAGAUGGucUGGCGCA-----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 47363 | 0.66 | 0.991476 |
Target: 5'- ------gUGCCAGACCGUacuccacaguccaGcGCGGCCg -3' miRNA: 3'- auuugagAUGGUCUGGCG-------------CaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 119442 | 0.66 | 0.994441 |
Target: 5'- --cGC-CU-CCAGACuCGCucACGGCCa -3' miRNA: 3'- auuUGaGAuGGUCUG-GCGcaUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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