miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 128875 0.71 0.908335
Target:  5'- cUGAcCUCcGCCAacGACCGUGgggGCGGCUg -3'
miRNA:   3'- -AUUuGAGaUGGU--CUGGCGCa--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 49929 0.71 0.914289
Target:  5'- uUGAGCUCUACCGaACCGCG-ACcGUCc -3'
miRNA:   3'- -AUUUGAGAUGGUcUGGCGCaUGcCGG- -5'
15688 3' -52.7 NC_004065.1 + 143201 0.71 0.916605
Target:  5'- --cGCUCUACCuagaucuguuccucaAGGCCGCGUucgcCGcGCCc -3'
miRNA:   3'- auuUGAGAUGG---------------UCUGGCGCAu---GC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 78927 0.7 0.924951
Target:  5'- --cGCUCUcgggcgccgcggcGCCGGccGCUGCGcugGCGGCCg -3'
miRNA:   3'- auuUGAGA-------------UGGUC--UGGCGCa--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 166321 0.7 0.925489
Target:  5'- aGGACUcCUAUCAGGuCCGUGUcuagggacauAUGGCCu -3'
miRNA:   3'- aUUUGA-GAUGGUCU-GGCGCA----------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 69467 0.7 0.925489
Target:  5'- aGAugUCgcGCCGG-CUGCGguacGCGGCCa -3'
miRNA:   3'- aUUugAGa-UGGUCuGGCGCa---UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 126597 0.7 0.929703
Target:  5'- aGGugUCgAUCAGGCCGCGcuccaucgcguCGGCCg -3'
miRNA:   3'- aUUugAGaUGGUCUGGCGCau---------GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 110179 0.7 0.930733
Target:  5'- cGAcCUCUGCgGcGGCCGCG-ACGcGCCg -3'
miRNA:   3'- aUUuGAGAUGgU-CUGGCGCaUGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 198309 0.7 0.93574
Target:  5'- uUGAACUCggggucGCaCAuGCCGCGgaACGGCCa -3'
miRNA:   3'- -AUUUGAGa-----UG-GUcUGGCGCa-UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 26937 0.7 0.93574
Target:  5'- aAGGCUCaa--GGACCGCuccgGCGGCCg -3'
miRNA:   3'- aUUUGAGauggUCUGGCGca--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 146197 0.7 0.93574
Target:  5'- cGGAUcCUGCC-GACCGUcaggGCGGCCa -3'
miRNA:   3'- aUUUGaGAUGGuCUGGCGca--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 139174 0.7 0.940511
Target:  5'- aGAGCUCgGCCAGGuuGaUGUA-GGCCg -3'
miRNA:   3'- aUUUGAGaUGGUCUggC-GCAUgCCGG- -5'
15688 3' -52.7 NC_004065.1 + 13190 0.7 0.940511
Target:  5'- aUAAuCUUUACgAGGuCCGCGUACGuGUCg -3'
miRNA:   3'- -AUUuGAGAUGgUCU-GGCGCAUGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 30353 0.7 0.940511
Target:  5'- aUGAAUg--GCaUAGACCGCGUGauCGGCCc -3'
miRNA:   3'- -AUUUGagaUG-GUCUGGCGCAU--GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 83278 0.7 0.945047
Target:  5'- --uACUCgACCGGcCuCGCG-GCGGCCg -3'
miRNA:   3'- auuUGAGaUGGUCuG-GCGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 107460 0.7 0.946796
Target:  5'- cGGGCgUCUGCCGcaggaggaaggcuccGACgGUGUACGGCg -3'
miRNA:   3'- aUUUG-AGAUGGU---------------CUGgCGCAUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 166153 0.69 0.94935
Target:  5'- aAGAUcCgUACCAcGACggcagCGCGUGCGGCCu -3'
miRNA:   3'- aUUUGaG-AUGGU-CUG-----GCGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 195849 0.69 0.94935
Target:  5'- uUGGACUCca-CGGAUCGC--ACGGCCg -3'
miRNA:   3'- -AUUUGAGaugGUCUGGCGcaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 138566 0.69 0.94935
Target:  5'- gAGGcCUCgcacgcgAUCAgGGCCGCGUccACGGCCu -3'
miRNA:   3'- aUUU-GAGa------UGGU-CUGGCGCA--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 135702 0.69 0.94935
Target:  5'- gUGAAuCUCUacGCCGGGCUGCGgGCGGg- -3'
miRNA:   3'- -AUUU-GAGA--UGGUCUGGCGCaUGCCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.