Results 41 - 60 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15688 | 3' | -52.7 | NC_004065.1 | + | 195849 | 0.69 | 0.94935 |
Target: 5'- uUGGACUCca-CGGAUCGC--ACGGCCg -3' miRNA: 3'- -AUUUGAGaugGUCUGGCGcaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 74236 | 0.69 | 0.94935 |
Target: 5'- gAGAC-CUGCCuGGACCGCG-ACGaCCu -3' miRNA: 3'- aUUUGaGAUGG-UCUGGCGCaUGCcGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 224114 | 0.69 | 0.957269 |
Target: 5'- gAGAUg--GCCGGGCCGg--GCGGCCg -3' miRNA: 3'- aUUUGagaUGGUCUGGCgcaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 114109 | 0.69 | 0.957269 |
Target: 5'- cGAGCUgCcgGCCgAGGCCGaCG-ACGGCCc -3' miRNA: 3'- aUUUGA-Ga-UGG-UCUGGC-GCaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 196829 | 0.69 | 0.957269 |
Target: 5'- -cGACUgugCUGCUucuGGCaCGCGUucGCGGCCg -3' miRNA: 3'- auUUGA---GAUGGu--CUG-GCGCA--UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 197968 | 0.69 | 0.960892 |
Target: 5'- gAAGCUC-ACgGcGGCCGCG-ACGGCg -3' miRNA: 3'- aUUUGAGaUGgU-CUGGCGCaUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 182564 | 0.69 | 0.964297 |
Target: 5'- -uGGCUCUcuagcuCCAuACUGCGUACGGUg -3' miRNA: 3'- auUUGAGAu-----GGUcUGGCGCAUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 138306 | 0.69 | 0.964297 |
Target: 5'- gUGGACgcgGCCcuGAUCGCGUGCgaGGCCu -3' miRNA: 3'- -AUUUGagaUGGu-CUGGCGCAUG--CCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 114382 | 0.69 | 0.964297 |
Target: 5'- --uACUCUGCggcucgGGGCCGuCGU-CGGCCu -3' miRNA: 3'- auuUGAGAUGg-----UCUGGC-GCAuGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 60443 | 0.69 | 0.964297 |
Target: 5'- ----aUCUACUAcACCGcCGUGCgGGCCa -3' miRNA: 3'- auuugAGAUGGUcUGGC-GCAUG-CCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 221685 | 0.68 | 0.96749 |
Target: 5'- ---uCUCUuugucaccGCCGGAUCGCGauccguuCGGCCg -3' miRNA: 3'- auuuGAGA--------UGGUCUGGCGCau-----GCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 135886 | 0.68 | 0.96749 |
Target: 5'- cGAGCUgUcggcugguggcGCCguAGAcCCGCGUgACGGCCg -3' miRNA: 3'- aUUUGAgA-----------UGG--UCU-GGCGCA-UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 37898 | 0.68 | 0.96749 |
Target: 5'- aUAGACUCUGC--GGCCGUGUccaggACGGUg -3' miRNA: 3'- -AUUUGAGAUGguCUGGCGCA-----UGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 132152 | 0.68 | 0.96749 |
Target: 5'- -cAACUCgaACCAGGCgGCG-GCGGUg -3' miRNA: 3'- auUUGAGa-UGGUCUGgCGCaUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 201012 | 0.68 | 0.96749 |
Target: 5'- -uGACUCg---AGGCCGCGUGCGcGCg -3' miRNA: 3'- auUUGAGauggUCUGGCGCAUGC-CGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 76664 | 0.68 | 0.970474 |
Target: 5'- -cGGCUCgaaaCGGAUCGCGU-CGGCg -3' miRNA: 3'- auUUGAGaug-GUCUGGCGCAuGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 135928 | 0.68 | 0.970474 |
Target: 5'- aGAAcCUCUGCgCGagccccccGACgCGCGuUACGGCCg -3' miRNA: 3'- aUUU-GAGAUG-GU--------CUG-GCGC-AUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 188266 | 0.68 | 0.971611 |
Target: 5'- -cGugUCUACCgucgcGGACCuccgcgagccauguuGCGcGCGGCCg -3' miRNA: 3'- auUugAGAUGG-----UCUGG---------------CGCaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 78470 | 0.68 | 0.973257 |
Target: 5'- aUGAugUCU-CCGcGCCGCGUcaaGCGcGCCc -3' miRNA: 3'- -AUUugAGAuGGUcUGGCGCA---UGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 114171 | 0.68 | 0.975845 |
Target: 5'- gGGACUCUGa-GGAgCGCGccgcCGGCCg -3' miRNA: 3'- aUUUGAGAUggUCUgGCGCau--GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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