Results 61 - 80 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15688 | 3' | -52.7 | NC_004065.1 | + | 126124 | 0.68 | 0.975845 |
Target: 5'- cGAGCUCUGCUGGAU-GCGgucgGCGuGCUg -3' miRNA: 3'- aUUUGAGAUGGUCUGgCGCa---UGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 121083 | 0.68 | 0.978245 |
Target: 5'- -----gCUACUucucgaGGGCCGCGUACgcgGGCCu -3' miRNA: 3'- auuugaGAUGG------UCUGGCGCAUG---CCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 6531 | 0.68 | 0.978245 |
Target: 5'- uUGAuCUUUACCGu-CCGCGgggaugcggACGGCCg -3' miRNA: 3'- -AUUuGAGAUGGUcuGGCGCa--------UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 185233 | 0.68 | 0.978245 |
Target: 5'- ---gUUCaUugUGGACgGUGUGCGGCCc -3' miRNA: 3'- auuuGAG-AugGUCUGgCGCAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 77485 | 0.67 | 0.980464 |
Target: 5'- gGAACUCggugGCCAcGAUCaGCGU--GGCCa -3' miRNA: 3'- aUUUGAGa---UGGU-CUGG-CGCAugCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 26303 | 0.67 | 0.980464 |
Target: 5'- -cGGCUCg--CGGuucgacGCCGCGUGCGaGCCg -3' miRNA: 3'- auUUGAGaugGUC------UGGCGCAUGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 115328 | 0.67 | 0.980464 |
Target: 5'- aGAGC-CgACCgAGGCCGCGUccucgcGCGcGCCg -3' miRNA: 3'- aUUUGaGaUGG-UCUGGCGCA------UGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 202172 | 0.67 | 0.980464 |
Target: 5'- ---uCUCgACCAGuucgccCCGCGgcaccACGGCCa -3' miRNA: 3'- auuuGAGaUGGUCu-----GGCGCa----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 92200 | 0.67 | 0.980464 |
Target: 5'- gAAACgagACgCGGGCCGCGaACaGGCCc -3' miRNA: 3'- aUUUGagaUG-GUCUGGCGCaUG-CCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 125284 | 0.67 | 0.980464 |
Target: 5'- gAGACUCUAUCAGGuagaacagcuCCGgGUACuGGUg -3' miRNA: 3'- aUUUGAGAUGGUCU----------GGCgCAUG-CCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 42715 | 0.67 | 0.982312 |
Target: 5'- --cACUCgcGCCAgcauggcGACCGCGUcuCGGCUg -3' miRNA: 3'- auuUGAGa-UGGU-------CUGGCGCAu-GCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 100552 | 0.67 | 0.982509 |
Target: 5'- ---uCUCUGCCgccgcuGGugCGCuUGCGGCUu -3' miRNA: 3'- auuuGAGAUGG------UCugGCGcAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 68739 | 0.67 | 0.982509 |
Target: 5'- -uGACggggucgCUGCCGGACUcggacaucgcgGCGgugcugGCGGCCu -3' miRNA: 3'- auUUGa------GAUGGUCUGG-----------CGCa-----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 169590 | 0.67 | 0.982509 |
Target: 5'- -cGGCUCcgGCCGGuuCGCGgg-GGCCg -3' miRNA: 3'- auUUGAGa-UGGUCugGCGCaugCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 169835 | 0.67 | 0.982509 |
Target: 5'- cGAAC-CgGCCGGAgCCGCGacaGCGGCa -3' miRNA: 3'- aUUUGaGaUGGUCU-GGCGCa--UGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 192301 | 0.67 | 0.982509 |
Target: 5'- -uAAC-CUGCCGGGuuGCGUACG-UCa -3' miRNA: 3'- auUUGaGAUGGUCUggCGCAUGCcGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 61025 | 0.67 | 0.982509 |
Target: 5'- gAGGCgggagGCCGcGGCCcUGUGCGGCCu -3' miRNA: 3'- aUUUGaga--UGGU-CUGGcGCAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 107259 | 0.67 | 0.982509 |
Target: 5'- aGAACUCgACCGuGuCgCGCGUGaugaGGCCg -3' miRNA: 3'- aUUUGAGaUGGU-CuG-GCGCAUg---CCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 208511 | 0.67 | 0.984389 |
Target: 5'- ---gUUCcACCuGACCGCGUuccguCGGCUc -3' miRNA: 3'- auuuGAGaUGGuCUGGCGCAu----GCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 207494 | 0.67 | 0.984389 |
Target: 5'- -cAGCUCguCCAGACuCGCGgcgcgauaGCGGUCg -3' miRNA: 3'- auUUGAGauGGUCUG-GCGCa-------UGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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