Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15688 | 3' | -52.7 | NC_004065.1 | + | 62686 | 0.66 | 0.991588 |
Target: 5'- ----gUCUGCC--GCCGCGUuggucGCGGUCu -3' miRNA: 3'- auuugAGAUGGucUGGCGCA-----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 66404 | 0.66 | 0.991588 |
Target: 5'- --cGCUCgGCCAGcuggcGCCG-GUccGCGGCCc -3' miRNA: 3'- auuUGAGaUGGUC-----UGGCgCA--UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 196539 | 0.66 | 0.991588 |
Target: 5'- aAGACgcCUGCCGG--CGCGUaggcgcccACGGCCg -3' miRNA: 3'- aUUUGa-GAUGGUCugGCGCA--------UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 130340 | 0.66 | 0.991588 |
Target: 5'- -------cGCCGGACCGCcgcgGCGGCg -3' miRNA: 3'- auuugagaUGGUCUGGCGca--UGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 26186 | 0.66 | 0.991588 |
Target: 5'- gAAACUCUuccucuucGCCGGcgggaACCuGCGcAUGGCCu -3' miRNA: 3'- aUUUGAGA--------UGGUC-----UGG-CGCaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 47363 | 0.66 | 0.991476 |
Target: 5'- ------gUGCCAGACCGUacuccacaguccaGcGCGGCCg -3' miRNA: 3'- auuugagAUGGUCUGGCG-------------CaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 49036 | 0.66 | 0.989116 |
Target: 5'- -cAugUCgacgaGCCGGACCGaaacccCGUcCGGCCa -3' miRNA: 3'- auUugAGa----UGGUCUGGC------GCAuGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 91885 | 0.66 | 0.989116 |
Target: 5'- aUAGAC-CUgACCGucGACCGCGacuucUGCGGCg -3' miRNA: 3'- -AUUUGaGA-UGGU--CUGGCGC-----AUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 134211 | 0.66 | 0.989116 |
Target: 5'- aUAGGCU-UGCCcGuCCGCGggucuCGGCCg -3' miRNA: 3'- -AUUUGAgAUGGuCuGGCGCau---GCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 133358 | 0.66 | 0.989116 |
Target: 5'- aAAAC-CUGCCucacuuACCGuCGcGCGGCCg -3' miRNA: 3'- aUUUGaGAUGGuc----UGGC-GCaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 113411 | 0.66 | 0.989116 |
Target: 5'- -cGACgUCgugGCCAGggaGCUGCGcagagcgGCGGCCg -3' miRNA: 3'- auUUG-AGa--UGGUC---UGGCGCa------UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 173365 | 0.66 | 0.989116 |
Target: 5'- -uGACgUCUACC-GAUCuccucaCGUACGGCCu -3' miRNA: 3'- auUUG-AGAUGGuCUGGc-----GCAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 211609 | 0.66 | 0.989116 |
Target: 5'- cUGGACgaagGCCGGACCGUGUucauCGGaCa -3' miRNA: 3'- -AUUUGaga-UGGUCUGGCGCAu---GCCgG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 39043 | 0.66 | 0.989116 |
Target: 5'- gGGGCUCUgcgggcGCCAGACCGUcagccCGGUg -3' miRNA: 3'- aUUUGAGA------UGGUCUGGCGcau--GCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 197982 | 0.67 | 0.987684 |
Target: 5'- uUGAACuUCUGCuCGGGCCa-GUGCGGgCa -3' miRNA: 3'- -AUUUG-AGAUG-GUCUGGcgCAUGCCgG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 41766 | 0.67 | 0.987684 |
Target: 5'- -cGACUCUgGCgGGACCGCccGCGcGCUc -3' miRNA: 3'- auUUGAGA-UGgUCUGGCGcaUGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 89345 | 0.67 | 0.987684 |
Target: 5'- aGAACUCgagGCacgaCAGGCCGCa---GGCCg -3' miRNA: 3'- aUUUGAGa--UG----GUCUGGCGcaugCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 147455 | 0.67 | 0.987684 |
Target: 5'- cGAGUUCUGCgGGAuCCaCGUcuGCGGCCg -3' miRNA: 3'- aUUUGAGAUGgUCU-GGcGCA--UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 221271 | 0.67 | 0.986112 |
Target: 5'- aUGAACcCUGCC--GCCGCcaccACGGCCu -3' miRNA: 3'- -AUUUGaGAUGGucUGGCGca--UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 13224 | 0.67 | 0.986112 |
Target: 5'- aUAAACUCUAgCGG-UUGCGgauUGCGGCa -3' miRNA: 3'- -AUUUGAGAUgGUCuGGCGC---AUGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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