miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 13224 0.67 0.986112
Target:  5'- aUAAACUCUAgCGG-UUGCGgauUGCGGCa -3'
miRNA:   3'- -AUUUGAGAUgGUCuGGCGC---AUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 121194 0.67 0.985611
Target:  5'- cAGGCUC-ACCgAGgccgucagccuguuGCCGCGgcugaACGGCCg -3'
miRNA:   3'- aUUUGAGaUGG-UC--------------UGGCGCa----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 148554 0.67 0.985097
Target:  5'- -cAGCUCUugCAGAucauccgggucagccCCGUGcGgGGCCu -3'
miRNA:   3'- auUUGAGAugGUCU---------------GGCGCaUgCCGG- -5'
15688 3' -52.7 NC_004065.1 + 208511 0.67 0.984389
Target:  5'- ---gUUCcACCuGACCGCGUuccguCGGCUc -3'
miRNA:   3'- auuuGAGaUGGuCUGGCGCAu----GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 59894 0.67 0.984389
Target:  5'- gAGAC-CgGCUGGACCGUGUcgaccgacGCGGUCa -3'
miRNA:   3'- aUUUGaGaUGGUCUGGCGCA--------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 207494 0.67 0.984389
Target:  5'- -cAGCUCguCCAGACuCGCGgcgcgauaGCGGUCg -3'
miRNA:   3'- auUUGAGauGGUCUG-GCGCa-------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 169835 0.67 0.982509
Target:  5'- cGAAC-CgGCCGGAgCCGCGacaGCGGCa -3'
miRNA:   3'- aUUUGaGaUGGUCU-GGCGCa--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 100552 0.67 0.982509
Target:  5'- ---uCUCUGCCgccgcuGGugCGCuUGCGGCUu -3'
miRNA:   3'- auuuGAGAUGG------UCugGCGcAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 107259 0.67 0.982509
Target:  5'- aGAACUCgACCGuGuCgCGCGUGaugaGGCCg -3'
miRNA:   3'- aUUUGAGaUGGU-CuG-GCGCAUg---CCGG- -5'
15688 3' -52.7 NC_004065.1 + 68739 0.67 0.982509
Target:  5'- -uGACggggucgCUGCCGGACUcggacaucgcgGCGgugcugGCGGCCu -3'
miRNA:   3'- auUUGa------GAUGGUCUGG-----------CGCa-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 169590 0.67 0.982509
Target:  5'- -cGGCUCcgGCCGGuuCGCGgg-GGCCg -3'
miRNA:   3'- auUUGAGa-UGGUCugGCGCaugCCGG- -5'
15688 3' -52.7 NC_004065.1 + 61025 0.67 0.982509
Target:  5'- gAGGCgggagGCCGcGGCCcUGUGCGGCCu -3'
miRNA:   3'- aUUUGaga--UGGU-CUGGcGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 192301 0.67 0.982509
Target:  5'- -uAAC-CUGCCGGGuuGCGUACG-UCa -3'
miRNA:   3'- auUUGaGAUGGUCUggCGCAUGCcGG- -5'
15688 3' -52.7 NC_004065.1 + 42715 0.67 0.982312
Target:  5'- --cACUCgcGCCAgcauggcGACCGCGUcuCGGCUg -3'
miRNA:   3'- auuUGAGa-UGGU-------CUGGCGCAu-GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 115328 0.67 0.980464
Target:  5'- aGAGC-CgACCgAGGCCGCGUccucgcGCGcGCCg -3'
miRNA:   3'- aUUUGaGaUGG-UCUGGCGCA------UGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 77485 0.67 0.980464
Target:  5'- gGAACUCggugGCCAcGAUCaGCGU--GGCCa -3'
miRNA:   3'- aUUUGAGa---UGGU-CUGG-CGCAugCCGG- -5'
15688 3' -52.7 NC_004065.1 + 125284 0.67 0.980464
Target:  5'- gAGACUCUAUCAGGuagaacagcuCCGgGUACuGGUg -3'
miRNA:   3'- aUUUGAGAUGGUCU----------GGCgCAUG-CCGg -5'
15688 3' -52.7 NC_004065.1 + 202172 0.67 0.980464
Target:  5'- ---uCUCgACCAGuucgccCCGCGgcaccACGGCCa -3'
miRNA:   3'- auuuGAGaUGGUCu-----GGCGCa----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 92200 0.67 0.980464
Target:  5'- gAAACgagACgCGGGCCGCGaACaGGCCc -3'
miRNA:   3'- aUUUGagaUG-GUCUGGCGCaUG-CCGG- -5'
15688 3' -52.7 NC_004065.1 + 26303 0.67 0.980464
Target:  5'- -cGGCUCg--CGGuucgacGCCGCGUGCGaGCCg -3'
miRNA:   3'- auUUGAGaugGUC------UGGCGCAUGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.