miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 100552 0.67 0.982509
Target:  5'- ---uCUCUGCCgccgcuGGugCGCuUGCGGCUu -3'
miRNA:   3'- auuuGAGAUGG------UCugGCGcAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 100852 0.69 0.94935
Target:  5'- gAAGCUgUGCgccuCGGACCG-GUACGuGCCg -3'
miRNA:   3'- aUUUGAgAUG----GUCUGGCgCAUGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 105911 0.66 0.994361
Target:  5'- gGAugUggGCCGGAaagagcaacgccaCCGCGUGCGGg- -3'
miRNA:   3'- aUUugAgaUGGUCU-------------GGCGCAUGCCgg -5'
15688 3' -52.7 NC_004065.1 + 107259 0.67 0.982509
Target:  5'- aGAACUCgACCGuGuCgCGCGUGaugaGGCCg -3'
miRNA:   3'- aUUUGAGaUGGU-CuG-GCGCAUg---CCGG- -5'
15688 3' -52.7 NC_004065.1 + 107460 0.7 0.946796
Target:  5'- cGGGCgUCUGCCGcaggaggaaggcuccGACgGUGUACGGCg -3'
miRNA:   3'- aUUUG-AGAUGGU---------------CUGgCGCAUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 108267 0.75 0.736896
Target:  5'- ---cCUCUaACCAGACgGUGUcucacGCGGCCa -3'
miRNA:   3'- auuuGAGA-UGGUCUGgCGCA-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 109422 0.73 0.811122
Target:  5'- -uGGCUCUacaACCAG-CCGCGcugGCGGCg -3'
miRNA:   3'- auUUGAGA---UGGUCuGGCGCa--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 110179 0.7 0.930733
Target:  5'- cGAcCUCUGCgGcGGCCGCG-ACGcGCCg -3'
miRNA:   3'- aUUuGAGAUGgU-CUGGCGCaUGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 110556 0.74 0.765658
Target:  5'- aGAGCU--GCgAGACCGUG-ACGGCCg -3'
miRNA:   3'- aUUUGAgaUGgUCUGGCGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 113411 0.66 0.989116
Target:  5'- -cGACgUCgugGCCAGggaGCUGCGcagagcgGCGGCCg -3'
miRNA:   3'- auUUG-AGa--UGGUC---UGGCGCa------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 114109 0.69 0.957269
Target:  5'- cGAGCUgCcgGCCgAGGCCGaCG-ACGGCCc -3'
miRNA:   3'- aUUUGA-Ga-UGG-UCUGGC-GCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 114171 0.68 0.975845
Target:  5'- gGGACUCUGa-GGAgCGCGccgcCGGCCg -3'
miRNA:   3'- aUUUGAGAUggUCUgGCGCau--GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 114382 0.69 0.964297
Target:  5'- --uACUCUGCggcucgGGGCCGuCGU-CGGCCu -3'
miRNA:   3'- auuUGAGAUGg-----UCUGGC-GCAuGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 115328 0.67 0.980464
Target:  5'- aGAGC-CgACCgAGGCCGCGUccucgcGCGcGCCg -3'
miRNA:   3'- aUUUGaGaUGG-UCUGGCGCA------UGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 118152 0.77 0.626309
Target:  5'- aUGGAUUgUcACCgAGACCGCGgcgGCGGCCg -3'
miRNA:   3'- -AUUUGAgA-UGG-UCUGGCGCa--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 119442 0.66 0.994441
Target:  5'- --cGC-CU-CCAGACuCGCucACGGCCa -3'
miRNA:   3'- auuUGaGAuGGUCUG-GCGcaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 121083 0.68 0.978245
Target:  5'- -----gCUACUucucgaGGGCCGCGUACgcgGGCCu -3'
miRNA:   3'- auuugaGAUGG------UCUGGCGCAUG---CCGG- -5'
15688 3' -52.7 NC_004065.1 + 121194 0.67 0.985611
Target:  5'- cAGGCUC-ACCgAGgccgucagccuguuGCCGCGgcugaACGGCCg -3'
miRNA:   3'- aUUUGAGaUGG-UC--------------UGGCGCa----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 121840 0.66 0.993594
Target:  5'- cAAAUUCcuCCAGACCGgGaucCGGCUg -3'
miRNA:   3'- aUUUGAGauGGUCUGGCgCau-GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 125284 0.67 0.980464
Target:  5'- gAGACUCUAUCAGGuagaacagcuCCGgGUACuGGUg -3'
miRNA:   3'- aUUUGAGAUGGUCU----------GGCgCAUG-CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.