miRNA display CGI


Results 81 - 100 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 146197 0.7 0.93574
Target:  5'- cGGAUcCUGCC-GACCGUcaggGCGGCCa -3'
miRNA:   3'- aUUUGaGAUGGuCUGGCGca--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 147455 0.67 0.987684
Target:  5'- cGAGUUCUGCgGGAuCCaCGUcuGCGGCCg -3'
miRNA:   3'- aUUUGAGAUGgUCU-GGcGCA--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 148554 0.67 0.985097
Target:  5'- -cAGCUCUugCAGAucauccgggucagccCCGUGcGgGGCCu -3'
miRNA:   3'- auUUGAGAugGUCU---------------GGCGCaUgCCGG- -5'
15688 3' -52.7 NC_004065.1 + 149699 0.66 0.992645
Target:  5'- gUGAACgccgggggGCCGcGGCCGCGc-CGGCCc -3'
miRNA:   3'- -AUUUGaga-----UGGU-CUGGCGCauGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 151983 0.66 0.993594
Target:  5'- -cGGCUCUcgaggGCCucGGACUGCGUG-GGCg -3'
miRNA:   3'- auUUGAGA-----UGG--UCUGGCGCAUgCCGg -5'
15688 3' -52.7 NC_004065.1 + 152288 0.71 0.902147
Target:  5'- gGAGCUCgcCCAGucCUGCGgcgGCGGCg -3'
miRNA:   3'- aUUUGAGauGGUCu-GGCGCa--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 159123 0.66 0.994441
Target:  5'- cAGACcCUuauuucgguaACguGACCGCGU-CGGUCa -3'
miRNA:   3'- aUUUGaGA----------UGguCUGGCGCAuGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 166153 0.69 0.94935
Target:  5'- aAGAUcCgUACCAcGACggcagCGCGUGCGGCCu -3'
miRNA:   3'- aUUUGaG-AUGGU-CUG-----GCGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 166321 0.7 0.925489
Target:  5'- aGGACUcCUAUCAGGuCCGUGUcuagggacauAUGGCCu -3'
miRNA:   3'- aUUUGA-GAUGGUCU-GGCGCA----------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 169184 0.66 0.994441
Target:  5'- --uGCUCUGCgucgcgUAcGCCGUG-ACGGCCg -3'
miRNA:   3'- auuUGAGAUG------GUcUGGCGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 169590 0.67 0.982509
Target:  5'- -cGGCUCcgGCCGGuuCGCGgg-GGCCg -3'
miRNA:   3'- auUUGAGa-UGGUCugGCGCaugCCGG- -5'
15688 3' -52.7 NC_004065.1 + 169835 0.67 0.982509
Target:  5'- cGAAC-CgGCCGGAgCCGCGacaGCGGCa -3'
miRNA:   3'- aUUUGaGaUGGUCU-GGCGCa--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 173365 0.66 0.989116
Target:  5'- -uGACgUCUACC-GAUCuccucaCGUACGGCCu -3'
miRNA:   3'- auUUG-AGAUGGuCUGGc-----GCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 182564 0.69 0.964297
Target:  5'- -uGGCUCUcuagcuCCAuACUGCGUACGGUg -3'
miRNA:   3'- auUUGAGAu-----GGUcUGGCGCAUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 185188 0.75 0.736896
Target:  5'- gGAGCUCUG-CAGACCGUcuccCGGCCg -3'
miRNA:   3'- aUUUGAGAUgGUCUGGCGcau-GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 185233 0.68 0.978245
Target:  5'- ---gUUCaUugUGGACgGUGUGCGGCCc -3'
miRNA:   3'- auuuGAG-AugGUCUGgCGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 188266 0.68 0.971611
Target:  5'- -cGugUCUACCgucgcGGACCuccgcgagccauguuGCGcGCGGCCg -3'
miRNA:   3'- auUugAGAUGG-----UCUGG---------------CGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 192301 0.67 0.982509
Target:  5'- -uAAC-CUGCCGGGuuGCGUACG-UCa -3'
miRNA:   3'- auUUGaGAUGGUCUggCGCAUGCcGG- -5'
15688 3' -52.7 NC_004065.1 + 193754 0.66 0.993594
Target:  5'- -cGGCUCUGCC-GACCGagaGaugAUGGCg -3'
miRNA:   3'- auUUGAGAUGGuCUGGCg--Ca--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 193956 0.71 0.895729
Target:  5'- --cACUCUGCCuccucgcGGCCGUG-ACGGCg -3'
miRNA:   3'- auuUGAGAUGGu------CUGGCGCaUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.