miRNA display CGI


Results 101 - 120 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 194545 0.75 0.707319
Target:  5'- -cGACUCggcGCCAGAUCGCGguugcaggACGGCg -3'
miRNA:   3'- auUUGAGa--UGGUCUGGCGCa-------UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 195849 0.69 0.94935
Target:  5'- uUGGACUCca-CGGAUCGC--ACGGCCg -3'
miRNA:   3'- -AUUUGAGaugGUCUGGCGcaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 196114 0.75 0.707319
Target:  5'- cAGACUCUG-CAGACCGUGaguugACGGCg -3'
miRNA:   3'- aUUUGAGAUgGUCUGGCGCa----UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 196539 0.66 0.991588
Target:  5'- aAGACgcCUGCCGG--CGCGUaggcgcccACGGCCg -3'
miRNA:   3'- aUUUGa-GAUGGUCugGCGCA--------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 196829 0.69 0.957269
Target:  5'- -cGACUgugCUGCUucuGGCaCGCGUucGCGGCCg -3'
miRNA:   3'- auUUGA---GAUGGu--CUG-GCGCA--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 197968 0.69 0.960892
Target:  5'- gAAGCUC-ACgGcGGCCGCG-ACGGCg -3'
miRNA:   3'- aUUUGAGaUGgU-CUGGCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 197982 0.67 0.987684
Target:  5'- uUGAACuUCUGCuCGGGCCa-GUGCGGgCa -3'
miRNA:   3'- -AUUUG-AGAUG-GUCUGGcgCAUGCCgG- -5'
15688 3' -52.7 NC_004065.1 + 198309 0.7 0.93574
Target:  5'- uUGAACUCggggucGCaCAuGCCGCGgaACGGCCa -3'
miRNA:   3'- -AUUUGAGa-----UG-GUcUGGCGCa-UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 198463 0.66 0.993594
Target:  5'- gGGGC-CUGCCGGA-CGCGgaguucAgGGCCg -3'
miRNA:   3'- aUUUGaGAUGGUCUgGCGCa-----UgCCGG- -5'
15688 3' -52.7 NC_004065.1 + 198545 0.66 0.994441
Target:  5'- -cAGCcgC-ACCAGGuCCGCGcGCGGCa -3'
miRNA:   3'- auUUGa-GaUGGUCU-GGCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 200428 0.72 0.867809
Target:  5'- cGAAgUcCUGCaGGACCGCGgucaccGCGGCCg -3'
miRNA:   3'- aUUUgA-GAUGgUCUGGCGCa-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 201012 0.68 0.96749
Target:  5'- -uGACUCg---AGGCCGCGUGCGcGCg -3'
miRNA:   3'- auUUGAGauggUCUGGCGCAUGC-CGg -5'
15688 3' -52.7 NC_004065.1 + 202172 0.67 0.980464
Target:  5'- ---uCUCgACCAGuucgccCCGCGgcaccACGGCCa -3'
miRNA:   3'- auuuGAGaUGGUCu-----GGCGCa----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 207494 0.67 0.984389
Target:  5'- -cAGCUCguCCAGACuCGCGgcgcgauaGCGGUCg -3'
miRNA:   3'- auUUGAGauGGUCUG-GCGCa-------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 207895 0.71 0.889081
Target:  5'- -------aGCCGG-CCGCGUGCGGCa -3'
miRNA:   3'- auuugagaUGGUCuGGCGCAUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 208511 0.67 0.984389
Target:  5'- ---gUUCcACCuGACCGCGUuccguCGGCUc -3'
miRNA:   3'- auuuGAGaUGGuCUGGCGCAu----GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 211609 0.66 0.989116
Target:  5'- cUGGACgaagGCCGGACCGUGUucauCGGaCa -3'
miRNA:   3'- -AUUUGaga-UGGUCUGGCGCAu---GCCgG- -5'
15688 3' -52.7 NC_004065.1 + 218028 0.66 0.994441
Target:  5'- aAGAC-C-ACUaAGACCGCGacgaucGCGGCCa -3'
miRNA:   3'- aUUUGaGaUGG-UCUGGCGCa-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 221271 0.67 0.986112
Target:  5'- aUGAACcCUGCC--GCCGCcaccACGGCCu -3'
miRNA:   3'- -AUUUGaGAUGGucUGGCGca--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 221685 0.68 0.96749
Target:  5'- ---uCUCUuugucaccGCCGGAUCGCGauccguuCGGCCg -3'
miRNA:   3'- auuuGAGA--------UGGUCUGGCGCau-----GCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.