Results 1 - 20 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15688 | 3' | -52.7 | NC_004065.1 | + | 226900 | 0.66 | 0.994441 |
Target: 5'- aGAACagUugCAGAgUGCGUGUGGCa -3' miRNA: 3'- aUUUGagAugGUCUgGCGCAUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 225529 | 0.72 | 0.867809 |
Target: 5'- ----gUC-GCCAGGCUaCGUGCGGCCa -3' miRNA: 3'- auuugAGaUGGUCUGGcGCAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 224114 | 0.69 | 0.957269 |
Target: 5'- gAGAUg--GCCGGGCCGg--GCGGCCg -3' miRNA: 3'- aUUUGagaUGGUCUGGCgcaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 223851 | 0.66 | 0.994441 |
Target: 5'- -cAACUCgUACUcGGCCGCc--CGGCCc -3' miRNA: 3'- auUUGAG-AUGGuCUGGCGcauGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 221685 | 0.68 | 0.96749 |
Target: 5'- ---uCUCUuugucaccGCCGGAUCGCGauccguuCGGCCg -3' miRNA: 3'- auuuGAGA--------UGGUCUGGCGCau-----GCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 221271 | 0.67 | 0.986112 |
Target: 5'- aUGAACcCUGCC--GCCGCcaccACGGCCu -3' miRNA: 3'- -AUUUGaGAUGGucUGGCGca--UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 218028 | 0.66 | 0.994441 |
Target: 5'- aAGAC-C-ACUaAGACCGCGacgaucGCGGCCa -3' miRNA: 3'- aUUUGaGaUGG-UCUGGCGCa-----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 211609 | 0.66 | 0.989116 |
Target: 5'- cUGGACgaagGCCGGACCGUGUucauCGGaCa -3' miRNA: 3'- -AUUUGaga-UGGUCUGGCGCAu---GCCgG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 208511 | 0.67 | 0.984389 |
Target: 5'- ---gUUCcACCuGACCGCGUuccguCGGCUc -3' miRNA: 3'- auuuGAGaUGGuCUGGCGCAu----GCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 207895 | 0.71 | 0.889081 |
Target: 5'- -------aGCCGG-CCGCGUGCGGCa -3' miRNA: 3'- auuugagaUGGUCuGGCGCAUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 207494 | 0.67 | 0.984389 |
Target: 5'- -cAGCUCguCCAGACuCGCGgcgcgauaGCGGUCg -3' miRNA: 3'- auUUGAGauGGUCUG-GCGCa-------UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 202172 | 0.67 | 0.980464 |
Target: 5'- ---uCUCgACCAGuucgccCCGCGgcaccACGGCCa -3' miRNA: 3'- auuuGAGaUGGUCu-----GGCGCa----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 201012 | 0.68 | 0.96749 |
Target: 5'- -uGACUCg---AGGCCGCGUGCGcGCg -3' miRNA: 3'- auUUGAGauggUCUGGCGCAUGC-CGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 200428 | 0.72 | 0.867809 |
Target: 5'- cGAAgUcCUGCaGGACCGCGgucaccGCGGCCg -3' miRNA: 3'- aUUUgA-GAUGgUCUGGCGCa-----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 198545 | 0.66 | 0.994441 |
Target: 5'- -cAGCcgC-ACCAGGuCCGCGcGCGGCa -3' miRNA: 3'- auUUGa-GaUGGUCU-GGCGCaUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 198463 | 0.66 | 0.993594 |
Target: 5'- gGGGC-CUGCCGGA-CGCGgaguucAgGGCCg -3' miRNA: 3'- aUUUGaGAUGGUCUgGCGCa-----UgCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 198309 | 0.7 | 0.93574 |
Target: 5'- uUGAACUCggggucGCaCAuGCCGCGgaACGGCCa -3' miRNA: 3'- -AUUUGAGa-----UG-GUcUGGCGCa-UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 197982 | 0.67 | 0.987684 |
Target: 5'- uUGAACuUCUGCuCGGGCCa-GUGCGGgCa -3' miRNA: 3'- -AUUUG-AGAUG-GUCUGGcgCAUGCCgG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 197968 | 0.69 | 0.960892 |
Target: 5'- gAAGCUC-ACgGcGGCCGCG-ACGGCg -3' miRNA: 3'- aUUUGAGaUGgU-CUGGCGCaUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 196829 | 0.69 | 0.957269 |
Target: 5'- -cGACUgugCUGCUucuGGCaCGCGUucGCGGCCg -3' miRNA: 3'- auUUGA---GAUGGu--CUG-GCGCA--UGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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