Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15688 | 3' | -52.7 | NC_004065.1 | + | 196539 | 0.66 | 0.991588 |
Target: 5'- aAGACgcCUGCCGG--CGCGUaggcgcccACGGCCg -3' miRNA: 3'- aUUUGa-GAUGGUCugGCGCA--------UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 196114 | 0.75 | 0.707319 |
Target: 5'- cAGACUCUG-CAGACCGUGaguugACGGCg -3' miRNA: 3'- aUUUGAGAUgGUCUGGCGCa----UGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 195849 | 0.69 | 0.94935 |
Target: 5'- uUGGACUCca-CGGAUCGC--ACGGCCg -3' miRNA: 3'- -AUUUGAGaugGUCUGGCGcaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 194545 | 0.75 | 0.707319 |
Target: 5'- -cGACUCggcGCCAGAUCGCGguugcaggACGGCg -3' miRNA: 3'- auUUGAGa--UGGUCUGGCGCa-------UGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 193956 | 0.71 | 0.895729 |
Target: 5'- --cACUCUGCCuccucgcGGCCGUG-ACGGCg -3' miRNA: 3'- auuUGAGAUGGu------CUGGCGCaUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 193754 | 0.66 | 0.993594 |
Target: 5'- -cGGCUCUGCC-GACCGagaGaugAUGGCg -3' miRNA: 3'- auUUGAGAUGGuCUGGCg--Ca--UGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 192301 | 0.67 | 0.982509 |
Target: 5'- -uAAC-CUGCCGGGuuGCGUACG-UCa -3' miRNA: 3'- auUUGaGAUGGUCUggCGCAUGCcGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 188266 | 0.68 | 0.971611 |
Target: 5'- -cGugUCUACCgucgcGGACCuccgcgagccauguuGCGcGCGGCCg -3' miRNA: 3'- auUugAGAUGG-----UCUGG---------------CGCaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 185233 | 0.68 | 0.978245 |
Target: 5'- ---gUUCaUugUGGACgGUGUGCGGCCc -3' miRNA: 3'- auuuGAG-AugGUCUGgCGCAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 185188 | 0.75 | 0.736896 |
Target: 5'- gGAGCUCUG-CAGACCGUcuccCGGCCg -3' miRNA: 3'- aUUUGAGAUgGUCUGGCGcau-GCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 182564 | 0.69 | 0.964297 |
Target: 5'- -uGGCUCUcuagcuCCAuACUGCGUACGGUg -3' miRNA: 3'- auUUGAGAu-----GGUcUGGCGCAUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 173365 | 0.66 | 0.989116 |
Target: 5'- -uGACgUCUACC-GAUCuccucaCGUACGGCCu -3' miRNA: 3'- auUUG-AGAUGGuCUGGc-----GCAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 169835 | 0.67 | 0.982509 |
Target: 5'- cGAAC-CgGCCGGAgCCGCGacaGCGGCa -3' miRNA: 3'- aUUUGaGaUGGUCU-GGCGCa--UGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 169590 | 0.67 | 0.982509 |
Target: 5'- -cGGCUCcgGCCGGuuCGCGgg-GGCCg -3' miRNA: 3'- auUUGAGa-UGGUCugGCGCaugCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 169184 | 0.66 | 0.994441 |
Target: 5'- --uGCUCUGCgucgcgUAcGCCGUG-ACGGCCg -3' miRNA: 3'- auuUGAGAUG------GUcUGGCGCaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 166321 | 0.7 | 0.925489 |
Target: 5'- aGGACUcCUAUCAGGuCCGUGUcuagggacauAUGGCCu -3' miRNA: 3'- aUUUGA-GAUGGUCU-GGCGCA----------UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 166153 | 0.69 | 0.94935 |
Target: 5'- aAGAUcCgUACCAcGACggcagCGCGUGCGGCCu -3' miRNA: 3'- aUUUGaG-AUGGU-CUG-----GCGCAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 159123 | 0.66 | 0.994441 |
Target: 5'- cAGACcCUuauuucgguaACguGACCGCGU-CGGUCa -3' miRNA: 3'- aUUUGaGA----------UGguCUGGCGCAuGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 152288 | 0.71 | 0.902147 |
Target: 5'- gGAGCUCgcCCAGucCUGCGgcgGCGGCg -3' miRNA: 3'- aUUUGAGauGGUCu-GGCGCa--UGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 151983 | 0.66 | 0.993594 |
Target: 5'- -cGGCUCUcgaggGCCucGGACUGCGUG-GGCg -3' miRNA: 3'- auUUGAGA-----UGG--UCUGGCGCAUgCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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