miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 149699 0.66 0.992645
Target:  5'- gUGAACgccgggggGCCGcGGCCGCGc-CGGCCc -3'
miRNA:   3'- -AUUUGaga-----UGGU-CUGGCGCauGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 148554 0.67 0.985097
Target:  5'- -cAGCUCUugCAGAucauccgggucagccCCGUGcGgGGCCu -3'
miRNA:   3'- auUUGAGAugGUCU---------------GGCGCaUgCCGG- -5'
15688 3' -52.7 NC_004065.1 + 147455 0.67 0.987684
Target:  5'- cGAGUUCUGCgGGAuCCaCGUcuGCGGCCg -3'
miRNA:   3'- aUUUGAGAUGgUCU-GGcGCA--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 146197 0.7 0.93574
Target:  5'- cGGAUcCUGCC-GACCGUcaggGCGGCCa -3'
miRNA:   3'- aUUUGaGAUGGuCUGGCGca--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 143201 0.71 0.916605
Target:  5'- --cGCUCUACCuagaucuguuccucaAGGCCGCGUucgcCGcGCCc -3'
miRNA:   3'- auuUGAGAUGG---------------UCUGGCGCAu---GC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 141329 0.66 0.994441
Target:  5'- -uAGCUg-GCCAGGcCCGCGUAguGCCa -3'
miRNA:   3'- auUUGAgaUGGUCU-GGCGCAUgcCGG- -5'
15688 3' -52.7 NC_004065.1 + 139633 0.66 0.994441
Target:  5'- -cGACcCcAUCAGACCGCGUcguCGGUg -3'
miRNA:   3'- auUUGaGaUGGUCUGGCGCAu--GCCGg -5'
15688 3' -52.7 NC_004065.1 + 139174 0.7 0.940511
Target:  5'- aGAGCUCgGCCAGGuuGaUGUA-GGCCg -3'
miRNA:   3'- aUUUGAGaUGGUCUggC-GCAUgCCGG- -5'
15688 3' -52.7 NC_004065.1 + 138566 0.69 0.94935
Target:  5'- gAGGcCUCgcacgcgAUCAgGGCCGCGUccACGGCCu -3'
miRNA:   3'- aUUU-GAGa------UGGU-CUGGCGCA--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 138306 0.69 0.964297
Target:  5'- gUGGACgcgGCCcuGAUCGCGUGCgaGGCCu -3'
miRNA:   3'- -AUUUGagaUGGu-CUGGCGCAUG--CCGG- -5'
15688 3' -52.7 NC_004065.1 + 135928 0.68 0.970474
Target:  5'- aGAAcCUCUGCgCGagccccccGACgCGCGuUACGGCCg -3'
miRNA:   3'- aUUU-GAGAUG-GU--------CUG-GCGC-AUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 135886 0.68 0.96749
Target:  5'- cGAGCUgUcggcugguggcGCCguAGAcCCGCGUgACGGCCg -3'
miRNA:   3'- aUUUGAgA-----------UGG--UCU-GGCGCA-UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 135702 0.69 0.94935
Target:  5'- gUGAAuCUCUacGCCGGGCUGCGgGCGGg- -3'
miRNA:   3'- -AUUU-GAGA--UGGUCUGGCGCaUGCCgg -5'
15688 3' -52.7 NC_004065.1 + 134211 0.66 0.989116
Target:  5'- aUAGGCU-UGCCcGuCCGCGggucuCGGCCg -3'
miRNA:   3'- -AUUUGAgAUGGuCuGGCGCau---GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 133358 0.66 0.989116
Target:  5'- aAAAC-CUGCCucacuuACCGuCGcGCGGCCg -3'
miRNA:   3'- aUUUGaGAUGGuc----UGGC-GCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 132152 0.68 0.96749
Target:  5'- -cAACUCgaACCAGGCgGCG-GCGGUg -3'
miRNA:   3'- auUUGAGa-UGGUCUGgCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 130340 0.66 0.991588
Target:  5'- -------cGCCGGACCGCcgcgGCGGCg -3'
miRNA:   3'- auuugagaUGGUCUGGCGca--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 128996 0.66 0.992645
Target:  5'- --uGCcgCUGCCGacGGCUGCcucgGCGGCCa -3'
miRNA:   3'- auuUGa-GAUGGU--CUGGCGca--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 128876 0.66 0.992645
Target:  5'- ---cCUCgu-CAGACauCGUGCGGCCg -3'
miRNA:   3'- auuuGAGaugGUCUGgcGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 128875 0.71 0.908335
Target:  5'- cUGAcCUCcGCCAacGACCGUGgggGCGGCUg -3'
miRNA:   3'- -AUUuGAGaUGGU--CUGGCGCa--UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.