Results 81 - 100 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15688 | 3' | -52.7 | NC_004065.1 | + | 107259 | 0.67 | 0.982509 |
Target: 5'- aGAACUCgACCGuGuCgCGCGUGaugaGGCCg -3' miRNA: 3'- aUUUGAGaUGGU-CuG-GCGCAUg---CCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 105911 | 0.66 | 0.994361 |
Target: 5'- gGAugUggGCCGGAaagagcaacgccaCCGCGUGCGGg- -3' miRNA: 3'- aUUugAgaUGGUCU-------------GGCGCAUGCCgg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 100852 | 0.69 | 0.94935 |
Target: 5'- gAAGCUgUGCgccuCGGACCG-GUACGuGCCg -3' miRNA: 3'- aUUUGAgAUG----GUCUGGCgCAUGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 100552 | 0.67 | 0.982509 |
Target: 5'- ---uCUCUGCCgccgcuGGugCGCuUGCGGCUu -3' miRNA: 3'- auuuGAGAUGG------UCugGCGcAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 93340 | 0.71 | 0.908335 |
Target: 5'- aAAGCUCgaGCCGGcCCGCcgcCGGCCa -3' miRNA: 3'- aUUUGAGa-UGGUCuGGCGcauGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 92200 | 0.67 | 0.980464 |
Target: 5'- gAAACgagACgCGGGCCGCGaACaGGCCc -3' miRNA: 3'- aUUUGagaUG-GUCUGGCGCaUG-CCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 91885 | 0.66 | 0.989116 |
Target: 5'- aUAGAC-CUgACCGucGACCGCGacuucUGCGGCg -3' miRNA: 3'- -AUUUGaGA-UGGU--CUGGCGC-----AUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 90957 | 0.67 | 0.986112 |
Target: 5'- ---cCUCUACCAGACgcggauCGUGUuCGuGCCc -3' miRNA: 3'- auuuGAGAUGGUCUG------GCGCAuGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 90909 | 0.71 | 0.889081 |
Target: 5'- cGAGCUCggAgCAGACCGCGU-CGaCCg -3' miRNA: 3'- aUUUGAGa-UgGUCUGGCGCAuGCcGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 89345 | 0.67 | 0.987684 |
Target: 5'- aGAACUCgagGCacgaCAGGCCGCa---GGCCg -3' miRNA: 3'- aUUUGAGa--UG----GUCUGGCGcaugCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 83278 | 0.7 | 0.945047 |
Target: 5'- --uACUCgACCGGcCuCGCG-GCGGCCg -3' miRNA: 3'- auuUGAGaUGGUCuG-GCGCaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 78927 | 0.7 | 0.924951 |
Target: 5'- --cGCUCUcgggcgccgcggcGCCGGccGCUGCGcugGCGGCCg -3' miRNA: 3'- auuUGAGA-------------UGGUC--UGGCGCa--UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 78470 | 0.68 | 0.973257 |
Target: 5'- aUGAugUCU-CCGcGCCGCGUcaaGCGcGCCc -3' miRNA: 3'- -AUUugAGAuGGUcUGGCGCA---UGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 77485 | 0.67 | 0.980464 |
Target: 5'- gGAACUCggugGCCAcGAUCaGCGU--GGCCa -3' miRNA: 3'- aUUUGAGa---UGGU-CUGG-CGCAugCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 76664 | 0.68 | 0.970474 |
Target: 5'- -cGGCUCgaaaCGGAUCGCGU-CGGCg -3' miRNA: 3'- auUUGAGaug-GUCUGGCGCAuGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 74236 | 0.69 | 0.94935 |
Target: 5'- gAGAC-CUGCCuGGACCGCG-ACGaCCu -3' miRNA: 3'- aUUUGaGAUGG-UCUGGCGCaUGCcGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 69467 | 0.7 | 0.925489 |
Target: 5'- aGAugUCgcGCCGG-CUGCGguacGCGGCCa -3' miRNA: 3'- aUUugAGa-UGGUCuGGCGCa---UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 68739 | 0.67 | 0.982509 |
Target: 5'- -uGACggggucgCUGCCGGACUcggacaucgcgGCGgugcugGCGGCCu -3' miRNA: 3'- auUUGa------GAUGGUCUGG-----------CGCa-----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 66404 | 0.66 | 0.991588 |
Target: 5'- --cGCUCgGCCAGcuggcGCCG-GUccGCGGCCc -3' miRNA: 3'- auuUGAGaUGGUC-----UGGCgCA--UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 62686 | 0.66 | 0.991588 |
Target: 5'- ----gUCUGCC--GCCGCGUuggucGCGGUCu -3' miRNA: 3'- auuugAGAUGGucUGGCGCA-----UGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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