Results 1 - 20 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15688 | 3' | -52.7 | NC_004065.1 | + | 107460 | 0.7 | 0.946796 |
Target: 5'- cGGGCgUCUGCCGcaggaggaaggcuccGACgGUGUACGGCg -3' miRNA: 3'- aUUUG-AGAUGGU---------------CUGgCGCAUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 69467 | 0.7 | 0.925489 |
Target: 5'- aGAugUCgcGCCGG-CUGCGguacGCGGCCa -3' miRNA: 3'- aUUugAGa-UGGUCuGGCGCa---UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 126597 | 0.7 | 0.929703 |
Target: 5'- aGGugUCgAUCAGGCCGCGcuccaucgcguCGGCCg -3' miRNA: 3'- aUUugAGaUGGUCUGGCGCau---------GCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 110179 | 0.7 | 0.930733 |
Target: 5'- cGAcCUCUGCgGcGGCCGCG-ACGcGCCg -3' miRNA: 3'- aUUuGAGAUGgU-CUGGCGCaUGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 26937 | 0.7 | 0.93574 |
Target: 5'- aAGGCUCaa--GGACCGCuccgGCGGCCg -3' miRNA: 3'- aUUUGAGauggUCUGGCGca--UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 198309 | 0.7 | 0.93574 |
Target: 5'- uUGAACUCggggucGCaCAuGCCGCGgaACGGCCa -3' miRNA: 3'- -AUUUGAGa-----UG-GUcUGGCGCa-UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 13190 | 0.7 | 0.940511 |
Target: 5'- aUAAuCUUUACgAGGuCCGCGUACGuGUCg -3' miRNA: 3'- -AUUuGAGAUGgUCU-GGCGCAUGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 30353 | 0.7 | 0.940511 |
Target: 5'- aUGAAUg--GCaUAGACCGCGUGauCGGCCc -3' miRNA: 3'- -AUUUGagaUG-GUCUGGCGCAU--GCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 83278 | 0.7 | 0.945047 |
Target: 5'- --uACUCgACCGGcCuCGCG-GCGGCCg -3' miRNA: 3'- auuUGAGaUGGUCuG-GCGCaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 166321 | 0.7 | 0.925489 |
Target: 5'- aGGACUcCUAUCAGGuCCGUGUcuagggacauAUGGCCu -3' miRNA: 3'- aUUUGA-GAUGGUCU-GGCGCA----------UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 143201 | 0.71 | 0.916605 |
Target: 5'- --cGCUCUACCuagaucuguuccucaAGGCCGCGUucgcCGcGCCc -3' miRNA: 3'- auuUGAGAUGG---------------UCUGGCGCAu---GC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 49929 | 0.71 | 0.914289 |
Target: 5'- uUGAGCUCUACCGaACCGCG-ACcGUCc -3' miRNA: 3'- -AUUUGAGAUGGUcUGGCGCaUGcCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 109422 | 0.73 | 0.811122 |
Target: 5'- -uGGCUCUacaACCAG-CCGCGcugGCGGCg -3' miRNA: 3'- auUUGAGA---UGGUCuGGCGCa--UGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 19679 | 0.73 | 0.836536 |
Target: 5'- -uGGCguaUGCCGGGCCGgGUaACGGCUg -3' miRNA: 3'- auUUGag-AUGGUCUGGCgCA-UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 26411 | 0.72 | 0.852569 |
Target: 5'- -cAACUCcGCCAcGGCgGCG-GCGGCCu -3' miRNA: 3'- auUUGAGaUGGU-CUGgCGCaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 200428 | 0.72 | 0.867809 |
Target: 5'- cGAAgUcCUGCaGGACCGCGgucaccGCGGCCg -3' miRNA: 3'- aUUUgA-GAUGgUCUGGCGCa-----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 60115 | 0.71 | 0.889081 |
Target: 5'- gAAGCg--GCCGG-CCGCGUACaGGCUc -3' miRNA: 3'- aUUUGagaUGGUCuGGCGCAUG-CCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 90909 | 0.71 | 0.889081 |
Target: 5'- cGAGCUCggAgCAGACCGCGU-CGaCCg -3' miRNA: 3'- aUUUGAGa-UgGUCUGGCGCAuGCcGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 152288 | 0.71 | 0.902147 |
Target: 5'- gGAGCUCgcCCAGucCUGCGgcgGCGGCg -3' miRNA: 3'- aUUUGAGauGGUCu-GGCGCa--UGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 93340 | 0.71 | 0.908335 |
Target: 5'- aAAGCUCgaGCCGGcCCGCcgcCGGCCa -3' miRNA: 3'- aUUUGAGa-UGGUCuGGCGcauGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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