miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 19679 0.73 0.836536
Target:  5'- -uGGCguaUGCCGGGCCGgGUaACGGCUg -3'
miRNA:   3'- auUUGag-AUGGUCUGGCgCA-UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 109422 0.73 0.811122
Target:  5'- -uGGCUCUacaACCAG-CCGCGcugGCGGCg -3'
miRNA:   3'- auUUGAGA---UGGUCuGGCGCa--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 118152 0.77 0.626309
Target:  5'- aUGGAUUgUcACCgAGACCGCGgcgGCGGCCg -3'
miRNA:   3'- -AUUUGAgA-UGG-UCUGGCGCa--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 126597 0.7 0.929703
Target:  5'- aGGugUCgAUCAGGCCGCGcuccaucgcguCGGCCg -3'
miRNA:   3'- aUUugAGaUGGUCUGGCGCau---------GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 110179 0.7 0.930733
Target:  5'- cGAcCUCUGCgGcGGCCGCG-ACGcGCCg -3'
miRNA:   3'- aUUuGAGAUGgU-CUGGCGCaUGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 78470 0.68 0.973257
Target:  5'- aUGAugUCU-CCGcGCCGCGUcaaGCGcGCCc -3'
miRNA:   3'- -AUUugAGAuGGUcUGGCGCA---UGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 76664 0.68 0.970474
Target:  5'- -cGGCUCgaaaCGGAUCGCGU-CGGCg -3'
miRNA:   3'- auUUGAGaug-GUCUGGCGCAuGCCGg -5'
15688 3' -52.7 NC_004065.1 + 221685 0.68 0.96749
Target:  5'- ---uCUCUuugucaccGCCGGAUCGCGauccguuCGGCCg -3'
miRNA:   3'- auuuGAGA--------UGGUCUGGCGCau-----GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 201012 0.68 0.96749
Target:  5'- -uGACUCg---AGGCCGCGUGCGcGCg -3'
miRNA:   3'- auUUGAGauggUCUGGCGCAUGC-CGg -5'
15688 3' -52.7 NC_004065.1 + 138306 0.69 0.964297
Target:  5'- gUGGACgcgGCCcuGAUCGCGUGCgaGGCCu -3'
miRNA:   3'- -AUUUGagaUGGu-CUGGCGCAUG--CCGG- -5'
15688 3' -52.7 NC_004065.1 + 114109 0.69 0.957269
Target:  5'- cGAGCUgCcgGCCgAGGCCGaCG-ACGGCCc -3'
miRNA:   3'- aUUUGA-Ga-UGG-UCUGGC-GCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 135702 0.69 0.94935
Target:  5'- gUGAAuCUCUacGCCGGGCUGCGgGCGGg- -3'
miRNA:   3'- -AUUU-GAGA--UGGUCUGGCGCaUGCCgg -5'
15688 3' -52.7 NC_004065.1 + 107460 0.7 0.946796
Target:  5'- cGGGCgUCUGCCGcaggaggaaggcuccGACgGUGUACGGCg -3'
miRNA:   3'- aUUUG-AGAUGGU---------------CUGgCGCAUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 83278 0.7 0.945047
Target:  5'- --uACUCgACCGGcCuCGCG-GCGGCCg -3'
miRNA:   3'- auuUGAGaUGGUCuG-GCGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 30353 0.7 0.940511
Target:  5'- aUGAAUg--GCaUAGACCGCGUGauCGGCCc -3'
miRNA:   3'- -AUUUGagaUG-GUCUGGCGCAU--GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 13190 0.7 0.940511
Target:  5'- aUAAuCUUUACgAGGuCCGCGUACGuGUCg -3'
miRNA:   3'- -AUUuGAGAUGgUCU-GGCGCAUGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 198309 0.7 0.93574
Target:  5'- uUGAACUCggggucGCaCAuGCCGCGgaACGGCCa -3'
miRNA:   3'- -AUUUGAGa-----UG-GUcUGGCGCa-UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 26937 0.7 0.93574
Target:  5'- aAGGCUCaa--GGACCGCuccgGCGGCCg -3'
miRNA:   3'- aUUUGAGauggUCUGGCGca--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 119442 0.66 0.994441
Target:  5'- --cGC-CU-CCAGACuCGCucACGGCCa -3'
miRNA:   3'- auuUGaGAuGGUCUG-GCGcaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 125868 0.77 0.633446
Target:  5'- ---cUUCUACCAGgcgcgcaucgacccGCCGCGcACGGCCa -3'
miRNA:   3'- auuuGAGAUGGUC--------------UGGCGCaUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.