miRNA: 3'- aUUUGagaUGGUCUGGCgcaUGCCGG- -5'
miRNA: 3'- aUUUGaGAUGG-UCUGGCGCaUGCcGG- -5'
miRNA: 3'- aUUUGAgAUG----GUCUGGCgCAUGC-CGG- -5'
miRNA: 3'- -AUUUGAGAUGGUCUGGCGCAUGCCGG- -5'
Results 121 - 124 of 124 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15688 | 3' | -52.7 | NC_004065.1 | + | 224114 | 0.69 | 0.957269 |
|
Target: 5'- gAGAUg--GCCGGGCCGg--GCGGCCg -3' miRNA: 3'- aUUUGagaUGGUCUGGCgcaUGCCGG- -5' |
|||||||
| 15688 | 3' | -52.7 | NC_004065.1 | + | 74236 | 0.69 | 0.94935 |
|
Target: 5'- gAGAC-CUGCCuGGACCGCG-ACGaCCu -3' miRNA: 3'- aUUUGaGAUGG-UCUGGCGCaUGCcGG- -5' |
|||||||
| 15688 | 3' | -52.7 | NC_004065.1 | + | 100852 | 0.69 | 0.94935 |
|
Target: 5'- gAAGCUgUGCgccuCGGACCG-GUACGuGCCg -3' miRNA: 3'- aUUUGAgAUG----GUCUGGCgCAUGC-CGG- -5' |
|||||||
| 15688 | 3' | -52.7 | NC_004065.1 | + | 30648 | 1.11 | 0.006324 |
|
Target: 5'- uUAAACUCUACCAGACCGCGUACGGCCg -3' miRNA: 3'- -AUUUGAGAUGGUCUGGCGCAUGCCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home