miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 30648 1.11 0.006324
Target:  5'- uUAAACUCUACCAGACCGCGUACGGCCg -3'
miRNA:   3'- -AUUUGAGAUGGUCUGGCGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 166153 0.69 0.94935
Target:  5'- aAGAUcCgUACCAcGACggcagCGCGUGCGGCCu -3'
miRNA:   3'- aUUUGaG-AUGGU-CUG-----GCGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 74236 0.69 0.94935
Target:  5'- gAGAC-CUGCCuGGACCGCG-ACGaCCu -3'
miRNA:   3'- aUUUGaGAUGG-UCUGGCGCaUGCcGG- -5'
15688 3' -52.7 NC_004065.1 + 119442 0.66 0.994441
Target:  5'- --cGC-CU-CCAGACuCGCucACGGCCa -3'
miRNA:   3'- auuUGaGAuGGUCUG-GCGcaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 185188 0.75 0.736896
Target:  5'- gGAGCUCUG-CAGACCGUcuccCGGCCg -3'
miRNA:   3'- aUUUGAGAUgGUCUGGCGcau-GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 108267 0.75 0.736896
Target:  5'- ---cCUCUaACCAGACgGUGUcucacGCGGCCa -3'
miRNA:   3'- auuuGAGA-UGGUCUGgCGCA-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 43418 0.72 0.851786
Target:  5'- cGGugUCUGCCGuucccgccguccGugCGCGUgucuuccGCGGCCg -3'
miRNA:   3'- aUUugAGAUGGU------------CugGCGCA-------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 225529 0.72 0.867809
Target:  5'- ----gUC-GCCAGGCUaCGUGCGGCCa -3'
miRNA:   3'- auuugAGaUGGUCUGGcGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 128875 0.71 0.908335
Target:  5'- cUGAcCUCcGCCAacGACCGUGgggGCGGCUg -3'
miRNA:   3'- -AUUuGAGaUGGU--CUGGCGCa--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 195849 0.69 0.94935
Target:  5'- uUGGACUCca-CGGAUCGC--ACGGCCg -3'
miRNA:   3'- -AUUUGAGaugGUCUGGCGcaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 146197 0.7 0.93574
Target:  5'- cGGAUcCUGCC-GACCGUcaggGCGGCCa -3'
miRNA:   3'- aUUUGaGAUGGuCUGGCGca--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 193956 0.71 0.895729
Target:  5'- --cACUCUGCCuccucgcGGCCGUG-ACGGCg -3'
miRNA:   3'- auuUGAGAUGGu------CUGGCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 125868 0.77 0.633446
Target:  5'- ---cUUCUACCAGgcgcgcaucgacccGCCGCGcACGGCCa -3'
miRNA:   3'- auuuGAGAUGGUC--------------UGGCGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 139174 0.7 0.940511
Target:  5'- aGAGCUCgGCCAGGuuGaUGUA-GGCCg -3'
miRNA:   3'- aUUUGAGaUGGUCUggC-GCAUgCCGG- -5'
15688 3' -52.7 NC_004065.1 + 196114 0.75 0.707319
Target:  5'- cAGACUCUG-CAGACCGUGaguugACGGCg -3'
miRNA:   3'- aUUUGAGAUgGUCUGGCGCa----UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 207895 0.71 0.889081
Target:  5'- -------aGCCGG-CCGCGUGCGGCa -3'
miRNA:   3'- auuugagaUGGUCuGGCGCAUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 138566 0.69 0.94935
Target:  5'- gAGGcCUCgcacgcgAUCAgGGCCGCGUccACGGCCu -3'
miRNA:   3'- aUUU-GAGa------UGGU-CUGGCGCA--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 100852 0.69 0.94935
Target:  5'- gAAGCUgUGCgccuCGGACCG-GUACGuGCCg -3'
miRNA:   3'- aUUUGAgAUG----GUCUGGCgCAUGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 194545 0.75 0.707319
Target:  5'- -cGACUCggcGCCAGAUCGCGguugcaggACGGCg -3'
miRNA:   3'- auUUGAGa--UGGUCUGGCGCa-------UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 110556 0.74 0.765658
Target:  5'- aGAGCU--GCgAGACCGUG-ACGGCCg -3'
miRNA:   3'- aUUUGAgaUGgUCUGGCGCaUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.