miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 197968 0.69 0.960892
Target:  5'- gAAGCUC-ACgGcGGCCGCG-ACGGCg -3'
miRNA:   3'- aUUUGAGaUGgU-CUGGCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 74236 0.69 0.94935
Target:  5'- gAGAC-CUGCCuGGACCGCG-ACGaCCu -3'
miRNA:   3'- aUUUGaGAUGG-UCUGGCGCaUGCcGG- -5'
15688 3' -52.7 NC_004065.1 + 193956 0.71 0.895729
Target:  5'- --cACUCUGCCuccucgcGGCCGUG-ACGGCg -3'
miRNA:   3'- auuUGAGAUGGu------CUGGCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 194545 0.75 0.707319
Target:  5'- -cGACUCggcGCCAGAUCGCGguugcaggACGGCg -3'
miRNA:   3'- auUUGAGa--UGGUCUGGCGCa-------UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 115328 0.67 0.980464
Target:  5'- aGAGC-CgACCgAGGCCGCGUccucgcGCGcGCCg -3'
miRNA:   3'- aUUUGaGaUGG-UCUGGCGCA------UGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 37898 0.68 0.96749
Target:  5'- aUAGACUCUGC--GGCCGUGUccaggACGGUg -3'
miRNA:   3'- -AUUUGAGAUGguCUGGCGCA-----UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 166153 0.69 0.94935
Target:  5'- aAGAUcCgUACCAcGACggcagCGCGUGCGGCCu -3'
miRNA:   3'- aUUUGaG-AUGGU-CUG-----GCGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 196114 0.75 0.707319
Target:  5'- cAGACUCUG-CAGACCGUGaguugACGGCg -3'
miRNA:   3'- aUUUGAGAUgGUCUGGCGCa----UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 132152 0.68 0.96749
Target:  5'- -cAACUCgaACCAGGCgGCG-GCGGUg -3'
miRNA:   3'- auUUGAGa-UGGUCUGgCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 125868 0.77 0.633446
Target:  5'- ---cUUCUACCAGgcgcgcaucgacccGCCGCGcACGGCCa -3'
miRNA:   3'- auuuGAGAUGGUC--------------UGGCGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 100852 0.69 0.94935
Target:  5'- gAAGCUgUGCgccuCGGACCG-GUACGuGCCg -3'
miRNA:   3'- aUUUGAgAUG----GUCUGGCgCAUGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 182564 0.69 0.964297
Target:  5'- -uGGCUCUcuagcuCCAuACUGCGUACGGUg -3'
miRNA:   3'- auUUGAGAu-----GGUcUGGCGCAUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 139174 0.7 0.940511
Target:  5'- aGAGCUCgGCCAGGuuGaUGUA-GGCCg -3'
miRNA:   3'- aUUUGAGaUGGUCUggC-GCAUgCCGG- -5'
15688 3' -52.7 NC_004065.1 + 128875 0.71 0.908335
Target:  5'- cUGAcCUCcGCCAacGACCGUGgggGCGGCUg -3'
miRNA:   3'- -AUUuGAGaUGGU--CUGGCGCa--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 43418 0.72 0.851786
Target:  5'- cGGugUCUGCCGuucccgccguccGugCGCGUgucuuccGCGGCCg -3'
miRNA:   3'- aUUugAGAUGGU------------CugGCGCA-------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 185188 0.75 0.736896
Target:  5'- gGAGCUCUG-CAGACCGUcuccCGGCCg -3'
miRNA:   3'- aUUUGAGAUgGUCUGGCGcau-GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 61025 0.67 0.982509
Target:  5'- gAGGCgggagGCCGcGGCCcUGUGCGGCCu -3'
miRNA:   3'- aUUUGaga--UGGU-CUGGcGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 26303 0.67 0.980464
Target:  5'- -cGGCUCg--CGGuucgacGCCGCGUGCGaGCCg -3'
miRNA:   3'- auUUGAGaugGUC------UGGCGCAUGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 121083 0.68 0.978245
Target:  5'- -----gCUACUucucgaGGGCCGCGUACgcgGGCCu -3'
miRNA:   3'- auuugaGAUGG------UCUGGCGCAUG---CCGG- -5'
15688 3' -52.7 NC_004065.1 + 135886 0.68 0.96749
Target:  5'- cGAGCUgUcggcugguggcGCCguAGAcCCGCGUgACGGCCg -3'
miRNA:   3'- aUUUGAgA-----------UGG--UCU-GGCGCA-UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.