miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 42715 0.67 0.982312
Target:  5'- --cACUCgcGCCAgcauggcGACCGCGUcuCGGCUg -3'
miRNA:   3'- auuUGAGa-UGGU-------CUGGCGCAu-GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 224114 0.69 0.957269
Target:  5'- gAGAUg--GCCGGGCCGg--GCGGCCg -3'
miRNA:   3'- aUUUGagaUGGUCUGGCgcaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 108267 0.75 0.736896
Target:  5'- ---cCUCUaACCAGACgGUGUcucacGCGGCCa -3'
miRNA:   3'- auuuGAGA-UGGUCUGgCGCA-----UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 26303 0.67 0.980464
Target:  5'- -cGGCUCg--CGGuucgacGCCGCGUGCGaGCCg -3'
miRNA:   3'- auUUGAGaugGUC------UGGCGCAUGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 185188 0.75 0.736896
Target:  5'- gGAGCUCUG-CAGACCGUcuccCGGCCg -3'
miRNA:   3'- aUUUGAGAUgGUCUGGCGcau-GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 60834 0.66 0.993594
Target:  5'- aGAACaUCgggcGCCccGCCGUGUGCGGaCCc -3'
miRNA:   3'- aUUUG-AGa---UGGucUGGCGCAUGCC-GG- -5'
15688 3' -52.7 NC_004065.1 + 43418 0.72 0.851786
Target:  5'- cGGugUCUGCCGuucccgccguccGugCGCGUgucuuccGCGGCCg -3'
miRNA:   3'- aUUugAGAUGGU------------CugGCGCA-------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 151983 0.66 0.993594
Target:  5'- -cGGCUCUcgaggGCCucGGACUGCGUG-GGCg -3'
miRNA:   3'- auUUGAGA-----UGG--UCUGGCGCAUgCCGg -5'
15688 3' -52.7 NC_004065.1 + 128996 0.66 0.992645
Target:  5'- --uGCcgCUGCCGacGGCUGCcucgGCGGCCa -3'
miRNA:   3'- auuUGa-GAUGGU--CUGGCGca--UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 134211 0.66 0.989116
Target:  5'- aUAGGCU-UGCCcGuCCGCGggucuCGGCCg -3'
miRNA:   3'- -AUUUGAgAUGGuCuGGCGCau---GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 39043 0.66 0.989116
Target:  5'- gGGGCUCUgcgggcGCCAGACCGUcagccCGGUg -3'
miRNA:   3'- aUUUGAGA------UGGUCUGGCGcau--GCCGg -5'
15688 3' -52.7 NC_004065.1 + 59894 0.67 0.984389
Target:  5'- gAGAC-CgGCUGGACCGUGUcgaccgacGCGGUCa -3'
miRNA:   3'- aUUUGaGaUGGUCUGGCGCA--------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 61025 0.67 0.982509
Target:  5'- gAGGCgggagGCCGcGGCCcUGUGCGGCCu -3'
miRNA:   3'- aUUUGaga--UGGU-CUGGcGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 6531 0.68 0.978245
Target:  5'- uUGAuCUUUACCGu-CCGCGgggaugcggACGGCCg -3'
miRNA:   3'- -AUUuGAGAUGGUcuGGCGCa--------UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 135928 0.68 0.970474
Target:  5'- aGAAcCUCUGCgCGagccccccGACgCGCGuUACGGCCg -3'
miRNA:   3'- aUUU-GAGAUG-GU--------CUG-GCGC-AUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 60443 0.69 0.964297
Target:  5'- ----aUCUACUAcACCGcCGUGCgGGCCa -3'
miRNA:   3'- auuugAGAUGGUcUGGC-GCAUG-CCGG- -5'
15688 3' -52.7 NC_004065.1 + 197968 0.69 0.960892
Target:  5'- gAAGCUC-ACgGcGGCCGCG-ACGGCg -3'
miRNA:   3'- aUUUGAGaUGgU-CUGGCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 166153 0.69 0.94935
Target:  5'- aAGAUcCgUACCAcGACggcagCGCGUGCGGCCu -3'
miRNA:   3'- aUUUGaG-AUGGU-CUG-----GCGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 139174 0.7 0.940511
Target:  5'- aGAGCUCgGCCAGGuuGaUGUA-GGCCg -3'
miRNA:   3'- aUUUGAGaUGGUCUggC-GCAUgCCGG- -5'
15688 3' -52.7 NC_004065.1 + 193956 0.71 0.895729
Target:  5'- --cACUCUGCCuccucgcGGCCGUG-ACGGCg -3'
miRNA:   3'- auuUGAGAUGGu------CUGGCGCaUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.