miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 3' -52.7 NC_004065.1 + 135886 0.68 0.96749
Target:  5'- cGAGCUgUcggcugguggcGCCguAGAcCCGCGUgACGGCCg -3'
miRNA:   3'- aUUUGAgA-----------UGG--UCU-GGCGCA-UGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 139633 0.66 0.994441
Target:  5'- -cGACcCcAUCAGACCGCGUcguCGGUg -3'
miRNA:   3'- auUUGaGaUGGUCUGGCGCAu--GCCGg -5'
15688 3' -52.7 NC_004065.1 + 119442 0.66 0.994441
Target:  5'- --cGC-CU-CCAGACuCGCucACGGCCa -3'
miRNA:   3'- auuUGaGAuGGUCUG-GCGcaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 169184 0.66 0.994441
Target:  5'- --uGCUCUGCgucgcgUAcGCCGUG-ACGGCCg -3'
miRNA:   3'- auuUGAGAUG------GUcUGGCGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 60834 0.66 0.993594
Target:  5'- aGAACaUCgggcGCCccGCCGUGUGCGGaCCc -3'
miRNA:   3'- aUUUG-AGa---UGGucUGGCGCAUGCC-GG- -5'
15688 3' -52.7 NC_004065.1 + 188266 0.68 0.971611
Target:  5'- -cGugUCUACCgucgcGGACCuccgcgagccauguuGCGcGCGGCCg -3'
miRNA:   3'- auUugAGAUGG-----UCUGG---------------CGCaUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 105911 0.66 0.994361
Target:  5'- gGAugUggGCCGGAaagagcaacgccaCCGCGUGCGGg- -3'
miRNA:   3'- aUUugAgaUGGUCU-------------GGCGCAUGCCgg -5'
15688 3' -52.7 NC_004065.1 + 223851 0.66 0.994441
Target:  5'- -cAACUCgUACUcGGCCGCc--CGGCCc -3'
miRNA:   3'- auUUGAG-AUGGuCUGGCGcauGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 198545 0.66 0.994441
Target:  5'- -cAGCcgC-ACCAGGuCCGCGcGCGGCa -3'
miRNA:   3'- auUUGa-GaUGGUCU-GGCGCaUGCCGg -5'
15688 3' -52.7 NC_004065.1 + 193754 0.66 0.993594
Target:  5'- -cGGCUCUGCC-GACCGagaGaugAUGGCg -3'
miRNA:   3'- auUUGAGAUGGuCUGGCg--Ca--UGCCGg -5'
15688 3' -52.7 NC_004065.1 + 149699 0.66 0.992645
Target:  5'- gUGAACgccgggggGCCGcGGCCGCGc-CGGCCc -3'
miRNA:   3'- -AUUUGaga-----UGGU-CUGGCGCauGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 90909 0.71 0.889081
Target:  5'- cGAGCUCggAgCAGACCGCGU-CGaCCg -3'
miRNA:   3'- aUUUGAGa-UgGUCUGGCGCAuGCcGG- -5'
15688 3' -52.7 NC_004065.1 + 114171 0.68 0.975845
Target:  5'- gGGACUCUGa-GGAgCGCGccgcCGGCCg -3'
miRNA:   3'- aUUUGAGAUggUCUgGCGCau--GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 126124 0.68 0.975845
Target:  5'- cGAGCUCUGCUGGAU-GCGgucgGCGuGCUg -3'
miRNA:   3'- aUUUGAGAUGGUCUGgCGCa---UGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 78470 0.68 0.973257
Target:  5'- aUGAugUCU-CCGcGCCGCGUcaaGCGcGCCc -3'
miRNA:   3'- -AUUugAGAuGGUcUGGCGCA---UGC-CGG- -5'
15688 3' -52.7 NC_004065.1 + 76664 0.68 0.970474
Target:  5'- -cGGCUCgaaaCGGAUCGCGU-CGGCg -3'
miRNA:   3'- auUUGAGaug-GUCUGGCGCAuGCCGg -5'
15688 3' -52.7 NC_004065.1 + 128876 0.66 0.992645
Target:  5'- ---cCUCgu-CAGACauCGUGCGGCCg -3'
miRNA:   3'- auuuGAGaugGUCUGgcGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 185233 0.68 0.978245
Target:  5'- ---gUUCaUugUGGACgGUGUGCGGCCc -3'
miRNA:   3'- auuuGAG-AugGUCUGgCGCAUGCCGG- -5'
15688 3' -52.7 NC_004065.1 + 126597 0.7 0.929703
Target:  5'- aGGugUCgAUCAGGCCGCGcuccaucgcguCGGCCg -3'
miRNA:   3'- aUUugAGaUGGUCUGGCGCau---------GCCGG- -5'
15688 3' -52.7 NC_004065.1 + 110179 0.7 0.930733
Target:  5'- cGAcCUCUGCgGcGGCCGCG-ACGcGCCg -3'
miRNA:   3'- aUUuGAGAUGgU-CUGGCGCaUGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.