Results 81 - 100 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15688 | 3' | -52.7 | NC_004065.1 | + | 128876 | 0.66 | 0.992645 |
Target: 5'- ---cCUCgu-CAGACauCGUGCGGCCg -3' miRNA: 3'- auuuGAGaugGUCUGgcGCAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 221271 | 0.67 | 0.986112 |
Target: 5'- aUGAACcCUGCC--GCCGCcaccACGGCCu -3' miRNA: 3'- -AUUUGaGAUGGucUGGCGca--UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 47363 | 0.66 | 0.991476 |
Target: 5'- ------gUGCCAGACCGUacuccacaguccaGcGCGGCCg -3' miRNA: 3'- auuugagAUGGUCUGGCG-------------CaUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 211609 | 0.66 | 0.989116 |
Target: 5'- cUGGACgaagGCCGGACCGUGUucauCGGaCa -3' miRNA: 3'- -AUUUGaga-UGGUCUGGCGCAu---GCCgG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 49036 | 0.66 | 0.989116 |
Target: 5'- -cAugUCgacgaGCCGGACCGaaacccCGUcCGGCCa -3' miRNA: 3'- auUugAGa----UGGUCUGGC------GCAuGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 113411 | 0.66 | 0.989116 |
Target: 5'- -cGACgUCgugGCCAGggaGCUGCGcagagcgGCGGCCg -3' miRNA: 3'- auUUG-AGa--UGGUC---UGGCGCa------UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 197982 | 0.67 | 0.987684 |
Target: 5'- uUGAACuUCUGCuCGGGCCa-GUGCGGgCa -3' miRNA: 3'- -AUUUG-AGAUG-GUCUGGcgCAUGCCgG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 89345 | 0.67 | 0.987684 |
Target: 5'- aGAACUCgagGCacgaCAGGCCGCa---GGCCg -3' miRNA: 3'- aUUUGAGa--UG----GUCUGGCGcaugCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 105911 | 0.66 | 0.994361 |
Target: 5'- gGAugUggGCCGGAaagagcaacgccaCCGCGUGCGGg- -3' miRNA: 3'- aUUugAgaUGGUCU-------------GGCGCAUGCCgg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 198545 | 0.66 | 0.994441 |
Target: 5'- -cAGCcgC-ACCAGGuCCGCGcGCGGCa -3' miRNA: 3'- auUUGa-GaUGGUCU-GGCGCaUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 201012 | 0.68 | 0.96749 |
Target: 5'- -uGACUCg---AGGCCGCGUGCGcGCg -3' miRNA: 3'- auUUGAGauggUCUGGCGCAUGC-CGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 221685 | 0.68 | 0.96749 |
Target: 5'- ---uCUCUuugucaccGCCGGAUCGCGauccguuCGGCCg -3' miRNA: 3'- auuuGAGA--------UGGUCUGGCGCau-----GCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 76664 | 0.68 | 0.970474 |
Target: 5'- -cGGCUCgaaaCGGAUCGCGU-CGGCg -3' miRNA: 3'- auUUGAGaug-GUCUGGCGCAuGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 78470 | 0.68 | 0.973257 |
Target: 5'- aUGAugUCU-CCGcGCCGCGUcaaGCGcGCCc -3' miRNA: 3'- -AUUugAGAuGGUcUGGCGCA---UGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 126124 | 0.68 | 0.975845 |
Target: 5'- cGAGCUCUGCUGGAU-GCGgucgGCGuGCUg -3' miRNA: 3'- aUUUGAGAUGGUCUGgCGCa---UGC-CGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 114171 | 0.68 | 0.975845 |
Target: 5'- gGGACUCUGa-GGAgCGCGccgcCGGCCg -3' miRNA: 3'- aUUUGAGAUggUCUgGCGCau--GCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 185233 | 0.68 | 0.978245 |
Target: 5'- ---gUUCaUugUGGACgGUGUGCGGCCc -3' miRNA: 3'- auuuGAG-AugGUCUGgCGCAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 196539 | 0.66 | 0.991588 |
Target: 5'- aAGACgcCUGCCGG--CGCGUaggcgcccACGGCCg -3' miRNA: 3'- aUUUGa-GAUGGUCugGCGCA--------UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 223851 | 0.66 | 0.994441 |
Target: 5'- -cAACUCgUACUcGGCCGCc--CGGCCc -3' miRNA: 3'- auUUGAG-AUGGuCUGGCGcauGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 218028 | 0.66 | 0.994441 |
Target: 5'- aAGAC-C-ACUaAGACCGCGacgaucGCGGCCa -3' miRNA: 3'- aUUUGaGaUGG-UCUGGCGCa-----UGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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