Results 101 - 120 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15688 | 3' | -52.7 | NC_004065.1 | + | 149699 | 0.66 | 0.992645 |
Target: 5'- gUGAACgccgggggGCCGcGGCCGCGc-CGGCCc -3' miRNA: 3'- -AUUUGaga-----UGGU-CUGGCGCauGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 193754 | 0.66 | 0.993594 |
Target: 5'- -cGGCUCUGCC-GACCGagaGaugAUGGCg -3' miRNA: 3'- auUUGAGAUGGuCUGGCg--Ca--UGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 105911 | 0.66 | 0.994361 |
Target: 5'- gGAugUggGCCGGAaagagcaacgccaCCGCGUGCGGg- -3' miRNA: 3'- aUUugAgaUGGUCU-------------GGCGCAUGCCgg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 198545 | 0.66 | 0.994441 |
Target: 5'- -cAGCcgC-ACCAGGuCCGCGcGCGGCa -3' miRNA: 3'- auUUGa-GaUGGUCU-GGCGCaUGCCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 218028 | 0.66 | 0.994441 |
Target: 5'- aAGAC-C-ACUaAGACCGCGacgaucGCGGCCa -3' miRNA: 3'- aUUUGaGaUGG-UCUGGCGCa-----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 113411 | 0.66 | 0.989116 |
Target: 5'- -cGACgUCgugGCCAGggaGCUGCGcagagcgGCGGCCg -3' miRNA: 3'- auUUG-AGa--UGGUC---UGGCGCa------UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 89345 | 0.67 | 0.987684 |
Target: 5'- aGAACUCgagGCacgaCAGGCCGCa---GGCCg -3' miRNA: 3'- aUUUGAGa--UG----GUCUGGCGcaugCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 147455 | 0.67 | 0.987684 |
Target: 5'- cGAGUUCUGCgGGAuCCaCGUcuGCGGCCg -3' miRNA: 3'- aUUUGAGAUGgUCU-GGcGCA--UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 185233 | 0.68 | 0.978245 |
Target: 5'- ---gUUCaUugUGGACgGUGUGCGGCCc -3' miRNA: 3'- auuuGAG-AugGUCUGgCGCAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 125284 | 0.67 | 0.980464 |
Target: 5'- gAGACUCUAUCAGGuagaacagcuCCGgGUACuGGUg -3' miRNA: 3'- aUUUGAGAUGGUCU----------GGCgCAUG-CCGg -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 202172 | 0.67 | 0.980464 |
Target: 5'- ---uCUCgACCAGuucgccCCGCGgcaccACGGCCa -3' miRNA: 3'- auuuGAGaUGGUCu-----GGCGCa----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 92200 | 0.67 | 0.980464 |
Target: 5'- gAAACgagACgCGGGCCGCGaACaGGCCc -3' miRNA: 3'- aUUUGagaUG-GUCUGGCGCaUG-CCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 100552 | 0.67 | 0.982509 |
Target: 5'- ---uCUCUGCCgccgcuGGugCGCuUGCGGCUu -3' miRNA: 3'- auuuGAGAUGG------UCugGCGcAUGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 68739 | 0.67 | 0.982509 |
Target: 5'- -uGACggggucgCUGCCGGACUcggacaucgcgGCGgugcugGCGGCCu -3' miRNA: 3'- auUUGa------GAUGGUCUGG-----------CGCa-----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 169590 | 0.67 | 0.982509 |
Target: 5'- -cGGCUCcgGCCGGuuCGCGgg-GGCCg -3' miRNA: 3'- auUUGAGa-UGGUCugGCGCaugCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 107259 | 0.67 | 0.982509 |
Target: 5'- aGAACUCgACCGuGuCgCGCGUGaugaGGCCg -3' miRNA: 3'- aUUUGAGaUGGU-CuG-GCGCAUg---CCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 207494 | 0.67 | 0.984389 |
Target: 5'- -cAGCUCguCCAGACuCGCGgcgcgauaGCGGUCg -3' miRNA: 3'- auUUGAGauGGUCUG-GCGCa-------UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 148554 | 0.67 | 0.985097 |
Target: 5'- -cAGCUCUugCAGAucauccgggucagccCCGUGcGgGGCCu -3' miRNA: 3'- auUUGAGAugGUCU---------------GGCGCaUgCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 121194 | 0.67 | 0.985611 |
Target: 5'- cAGGCUC-ACCgAGgccgucagccuguuGCCGCGgcugaACGGCCg -3' miRNA: 3'- aUUUGAGaUGG-UC--------------UGGCGCa----UGCCGG- -5' |
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15688 | 3' | -52.7 | NC_004065.1 | + | 221271 | 0.67 | 0.986112 |
Target: 5'- aUGAACcCUGCC--GCCGCcaccACGGCCu -3' miRNA: 3'- -AUUUGaGAUGGucUGGCGca--UGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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