miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15688 5' -57.7 NC_004065.1 + 27162 0.66 0.921395
Target:  5'- cGGGGuCCGG-CGUGCGGUCgagcgGCCu- -3'
miRNA:   3'- -CCCC-GGCUaGUGCGCCAGaua--CGGua -5'
15688 5' -57.7 NC_004065.1 + 83671 0.66 0.921395
Target:  5'- cGGGGCCG-UCG-GCGGg----GCCGUg -3'
miRNA:   3'- -CCCCGGCuAGUgCGCCagauaCGGUA- -5'
15688 5' -57.7 NC_004065.1 + 119523 0.66 0.921395
Target:  5'- gGGcGGCgCGGggACGUGGUCgaggGCCAg -3'
miRNA:   3'- -CC-CCG-GCUagUGCGCCAGaua-CGGUa -5'
15688 5' -57.7 NC_004065.1 + 196652 0.66 0.91591
Target:  5'- aGGGGCCaGuagCGCGCGGcgucUCUcacGCCAc -3'
miRNA:   3'- -CCCCGG-Cua-GUGCGCC----AGAua-CGGUa -5'
15688 5' -57.7 NC_004065.1 + 25802 0.66 0.91591
Target:  5'- cGGGGCCGAcgCcgACGCcGUCUGUcGCUu- -3'
miRNA:   3'- -CCCCGGCUa-G--UGCGcCAGAUA-CGGua -5'
15688 5' -57.7 NC_004065.1 + 22276 0.66 0.91591
Target:  5'- cGGGGCCGuggC-CG-GGUUaGUGCCGg -3'
miRNA:   3'- -CCCCGGCua-GuGCgCCAGaUACGGUa -5'
15688 5' -57.7 NC_004065.1 + 120575 0.66 0.910203
Target:  5'- cGGGCgGGaccUCcgGCGcCGGUCUcgGCCGg -3'
miRNA:   3'- cCCCGgCU---AG--UGC-GCCAGAuaCGGUa -5'
15688 5' -57.7 NC_004065.1 + 108350 0.66 0.904276
Target:  5'- uGGGGCCGAggCAcCGCGGaUCU---CCAg -3'
miRNA:   3'- -CCCCGGCUa-GU-GCGCC-AGAuacGGUa -5'
15688 5' -57.7 NC_004065.1 + 117421 0.66 0.898131
Target:  5'- aGGGGCgGAccccgUCgGCGCuGUCgGUGCCGUu -3'
miRNA:   3'- -CCCCGgCU-----AG-UGCGcCAGaUACGGUA- -5'
15688 5' -57.7 NC_004065.1 + 200479 0.66 0.89177
Target:  5'- cGGGCCGuuaCACGCuG-CUcgGCCAg -3'
miRNA:   3'- cCCCGGCua-GUGCGcCaGAuaCGGUa -5'
15688 5' -57.7 NC_004065.1 + 30391 0.67 0.876338
Target:  5'- -cGGCCG--UACGCGGUCUGguagaguuuaagccUGCCGc -3'
miRNA:   3'- ccCCGGCuaGUGCGCCAGAU--------------ACGGUa -5'
15688 5' -57.7 NC_004065.1 + 114370 0.67 0.871425
Target:  5'- cGGGGCCGu---CGuCGGcCUcgGCCGg -3'
miRNA:   3'- -CCCCGGCuaguGC-GCCaGAuaCGGUa -5'
15688 5' -57.7 NC_004065.1 + 109849 0.67 0.871425
Target:  5'- gGGGGUCGA--GCGCGGcCUGauacGCCGc -3'
miRNA:   3'- -CCCCGGCUagUGCGCCaGAUa---CGGUa -5'
15688 5' -57.7 NC_004065.1 + 198440 0.68 0.841524
Target:  5'- aGGGCCGAcCACGUGaUCgugGCCGa -3'
miRNA:   3'- cCCCGGCUaGUGCGCcAGauaCGGUa -5'
15688 5' -57.7 NC_004065.1 + 141068 0.68 0.841524
Target:  5'- cGGGGCUGGcacUACGCGGgcCUG-GCCAg -3'
miRNA:   3'- -CCCCGGCUa--GUGCGCCa-GAUaCGGUa -5'
15688 5' -57.7 NC_004065.1 + 63710 0.68 0.841524
Target:  5'- cGGGCCguGAUCGCcugGUGGUCggcGCCGUa -3'
miRNA:   3'- cCCCGG--CUAGUG---CGCCAGauaCGGUA- -5'
15688 5' -57.7 NC_004065.1 + 50600 0.68 0.841524
Target:  5'- gGGGGCUcggGAUCGCgGCGGUggccacgcGUGCCAc -3'
miRNA:   3'- -CCCCGG---CUAGUG-CGCCAga------UACGGUa -5'
15688 5' -57.7 NC_004065.1 + 161041 0.68 0.833589
Target:  5'- aGGGGCCGGUCgACGCuaUCUAUcGgCAUu -3'
miRNA:   3'- -CCCCGGCUAG-UGCGccAGAUA-CgGUA- -5'
15688 5' -57.7 NC_004065.1 + 24755 0.68 0.833589
Target:  5'- uGGGGCCGG-CGCucagggccgGCGG-CgGUGCCAUc -3'
miRNA:   3'- -CCCCGGCUaGUG---------CGCCaGaUACGGUA- -5'
15688 5' -57.7 NC_004065.1 + 154893 0.68 0.817214
Target:  5'- cGGGGUCGAcgaUCGCGCGaUCgaaGCCGc -3'
miRNA:   3'- -CCCCGGCU---AGUGCGCcAGauaCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.