miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15689 5' -56.9 NC_004065.1 + 26649 0.66 0.946178
Target:  5'- -gCGGAguUGGagGCGGGGGcauGGGGAa -3'
miRNA:   3'- uaGCCUguGCCagCGCUCCUu--CUCCU- -5'
15689 5' -56.9 NC_004065.1 + 195954 0.66 0.941844
Target:  5'- uUCGGAgaaUACGG-CgGCGuGGAcgAGAGGAg -3'
miRNA:   3'- uAGCCU---GUGCCaG-CGCuCCU--UCUCCU- -5'
15689 5' -56.9 NC_004065.1 + 49987 0.66 0.941399
Target:  5'- uGUCGGACAcCGGuccgaacucUCGCcGGGcaucaugGAGAGGAc -3'
miRNA:   3'- -UAGCCUGU-GCC---------AGCGcUCC-------UUCUCCU- -5'
15689 5' -56.9 NC_004065.1 + 19088 0.66 0.93729
Target:  5'- aGUCGGugGgGGagGaGGGGAAGAcGGAu -3'
miRNA:   3'- -UAGCCugUgCCagCgCUCCUUCU-CCU- -5'
15689 5' -56.9 NC_004065.1 + 16360 0.66 0.93729
Target:  5'- uGUCGaGCACGGUCaaCGuGGAAGAGa- -3'
miRNA:   3'- -UAGCcUGUGCCAGc-GCuCCUUCUCcu -5'
15689 5' -56.9 NC_004065.1 + 79121 0.66 0.932025
Target:  5'- -cCGcGACACcuGGUCGUucccguaGGGGGAGAGGu -3'
miRNA:   3'- uaGC-CUGUG--CCAGCG-------CUCCUUCUCCu -5'
15689 5' -56.9 NC_004065.1 + 165653 0.66 0.932025
Target:  5'- cUCGGACagagccuGCGGaCGCGAuccGAGAGGAu -3'
miRNA:   3'- uAGCCUG-------UGCCaGCGCUcc-UUCUCCU- -5'
15689 5' -56.9 NC_004065.1 + 147657 0.66 0.927517
Target:  5'- -cUGGACGCGGUUGCGuccGGggGc-GAa -3'
miRNA:   3'- uaGCCUGUGCCAGCGCu--CCuuCucCU- -5'
15689 5' -56.9 NC_004065.1 + 69766 0.66 0.927517
Target:  5'- -cCGGACAUGcacgCGCGAcugaaGAAGAGGAu -3'
miRNA:   3'- uaGCCUGUGCca--GCGCUc----CUUCUCCU- -5'
15689 5' -56.9 NC_004065.1 + 207786 0.66 0.922297
Target:  5'- ---cGACGCGGagcgCGCGGcGAGGAGGAc -3'
miRNA:   3'- uagcCUGUGCCa---GCGCUcCUUCUCCU- -5'
15689 5' -56.9 NC_004065.1 + 94067 0.66 0.922297
Target:  5'- -cCGGACAgGGacCGgGAgcucgGGGAGAGGAg -3'
miRNA:   3'- uaGCCUGUgCCa-GCgCU-----CCUUCUCCU- -5'
15689 5' -56.9 NC_004065.1 + 200822 0.66 0.922297
Target:  5'- gAUCGGACGgGG-CGaCGGGGAcgacccGGuGGAg -3'
miRNA:   3'- -UAGCCUGUgCCaGC-GCUCCU------UCuCCU- -5'
15689 5' -56.9 NC_004065.1 + 121826 0.66 0.922297
Target:  5'- -gCGGACGgaGGUgGCGGGGAugucuGGGGu -3'
miRNA:   3'- uaGCCUGUg-CCAgCGCUCCUu----CUCCu -5'
15689 5' -56.9 NC_004065.1 + 98645 0.66 0.920687
Target:  5'- cUCGGucgcucguacguacGCGCGGUUGCuGAcGggGGGGAc -3'
miRNA:   3'- uAGCC--------------UGUGCCAGCG-CUcCuuCUCCU- -5'
15689 5' -56.9 NC_004065.1 + 158748 0.67 0.912911
Target:  5'- cAUCGGgagcacgGCACGGUccuuaCacaccuucccuugcuGCGAGGAAGGGGGu -3'
miRNA:   3'- -UAGCC-------UGUGCCA-----G---------------CGCUCCUUCUCCU- -5'
15689 5' -56.9 NC_004065.1 + 130880 0.67 0.911188
Target:  5'- cUCGGGCGcCGG-CGUGAGGuccucauGAGGu -3'
miRNA:   3'- uAGCCUGU-GCCaGCGCUCCuu-----CUCCu -5'
15689 5' -56.9 NC_004065.1 + 111515 0.67 0.911188
Target:  5'- cUCGGuCACGGcgcCGaCGAGGcAGAGGc -3'
miRNA:   3'- uAGCCuGUGCCa--GC-GCUCCuUCUCCu -5'
15689 5' -56.9 NC_004065.1 + 89095 0.67 0.905302
Target:  5'- uUCGGACAgauCGGguacuaCGUGGGGucGGGGGu -3'
miRNA:   3'- uAGCCUGU---GCCa-----GCGCUCCuuCUCCU- -5'
15689 5' -56.9 NC_004065.1 + 99593 0.67 0.905302
Target:  5'- cGUCGGGCGaGGagGCgGAGGAGaAGGAg -3'
miRNA:   3'- -UAGCCUGUgCCagCG-CUCCUUcUCCU- -5'
15689 5' -56.9 NC_004065.1 + 109096 0.67 0.892879
Target:  5'- uGUCGGACAuucUGGgCG-GAGGAgAGGGGAc -3'
miRNA:   3'- -UAGCCUGU---GCCaGCgCUCCU-UCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.