miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1569 3' -59 NC_001347.2 + 89736 0.66 0.88841
Target:  5'- -cCCGCCGUCgucGCCuGCGGcgucgGCGCa- -3'
miRNA:   3'- gaGGUGGCAGa--CGG-CGCCaa---CGUGgg -5'
1569 3' -59 NC_001347.2 + 152053 0.66 0.88841
Target:  5'- -aCCACCGUCgGCCGUG--UGCAaCUa -3'
miRNA:   3'- gaGGUGGCAGaCGGCGCcaACGUgGG- -5'
1569 3' -59 NC_001347.2 + 113190 0.66 0.88185
Target:  5'- -gCCGCCGgcguggcggcCUGaCUGCGGcUGuCGCCCg -3'
miRNA:   3'- gaGGUGGCa---------GAC-GGCGCCaAC-GUGGG- -5'
1569 3' -59 NC_001347.2 + 182637 0.66 0.88185
Target:  5'- --gC-CCGUCUGCCGagag-GCGCCCu -3'
miRNA:   3'- gagGuGGCAGACGGCgccaaCGUGGG- -5'
1569 3' -59 NC_001347.2 + 162329 0.66 0.87509
Target:  5'- cCUCCAucuuCUGUugaCUGCUGCGGUagcgUGCaaagucGCCCu -3'
miRNA:   3'- -GAGGU----GGCA---GACGGCGCCA----ACG------UGGG- -5'
1569 3' -59 NC_001347.2 + 74112 0.66 0.87509
Target:  5'- -aCgACgGUCaGCCGCGGgguUGaUACCCa -3'
miRNA:   3'- gaGgUGgCAGaCGGCGCCa--AC-GUGGG- -5'
1569 3' -59 NC_001347.2 + 208087 0.66 0.868135
Target:  5'- --gUACCG-CUGCCGCagauGGgcGCACCg -3'
miRNA:   3'- gagGUGGCaGACGGCG----CCaaCGUGGg -5'
1569 3' -59 NC_001347.2 + 38093 0.66 0.868135
Target:  5'- gCUCCGCCGcCagcggguacacgUGCCcguccaGCGGgcaGUACCCg -3'
miRNA:   3'- -GAGGUGGCaG------------ACGG------CGCCaa-CGUGGG- -5'
1569 3' -59 NC_001347.2 + 156623 0.66 0.868135
Target:  5'- -aCCAUgGUC-GCCGCuGGcgGCGCCg -3'
miRNA:   3'- gaGGUGgCAGaCGGCG-CCaaCGUGGg -5'
1569 3' -59 NC_001347.2 + 39632 0.66 0.868135
Target:  5'- cCUUCGucgcCCGUgUGCCGCGGgcGaCACgCa -3'
miRNA:   3'- -GAGGU----GGCAgACGGCGCCaaC-GUGgG- -5'
1569 3' -59 NC_001347.2 + 161629 0.66 0.868135
Target:  5'- uUCCACCGcCUGgaccaugucgacCCGCGGcguggacGCGCCg -3'
miRNA:   3'- gAGGUGGCaGAC------------GGCGCCaa-----CGUGGg -5'
1569 3' -59 NC_001347.2 + 63104 0.66 0.86387
Target:  5'- -gCCGCCGUggCcGCCGCGGccGCcgcuguggccggaguGCCCg -3'
miRNA:   3'- gaGGUGGCA--GaCGGCGCCaaCG---------------UGGG- -5'
1569 3' -59 NC_001347.2 + 84610 0.66 0.860989
Target:  5'- uUCUuggaGCCGUCgugggugGCCucGCGGUgGCugCCg -3'
miRNA:   3'- gAGG----UGGCAGa------CGG--CGCCAaCGugGG- -5'
1569 3' -59 NC_001347.2 + 193131 0.67 0.853657
Target:  5'- cCUCC-UCGUCgucGCCGCcGUcGCGCCUu -3'
miRNA:   3'- -GAGGuGGCAGa--CGGCGcCAaCGUGGG- -5'
1569 3' -59 NC_001347.2 + 157818 0.67 0.846144
Target:  5'- -gCCGCgGUC-GCCGCaGUUGCgggGCCUc -3'
miRNA:   3'- gaGGUGgCAGaCGGCGcCAACG---UGGG- -5'
1569 3' -59 NC_001347.2 + 124409 0.67 0.846144
Target:  5'- -aCCACCGUa-GCCaaaGCGGUUuuuacCACCCa -3'
miRNA:   3'- gaGGUGGCAgaCGG---CGCCAAc----GUGGG- -5'
1569 3' -59 NC_001347.2 + 75772 0.67 0.845383
Target:  5'- --aCGCCGUCucgucguUGCCGcCGG-UGCuCCCg -3'
miRNA:   3'- gagGUGGCAG-------ACGGC-GCCaACGuGGG- -5'
1569 3' -59 NC_001347.2 + 191043 0.67 0.838456
Target:  5'- gUCCAUCGU--GCCGCGGaacUGCGCg- -3'
miRNA:   3'- gAGGUGGCAgaCGGCGCCa--ACGUGgg -5'
1569 3' -59 NC_001347.2 + 196142 0.67 0.838456
Target:  5'- -gCCGCUGcCUGCCgGCGGcccUGUGCCg -3'
miRNA:   3'- gaGGUGGCaGACGG-CGCCa--ACGUGGg -5'
1569 3' -59 NC_001347.2 + 74848 0.67 0.838456
Target:  5'- -aCCGCCG-CgaaagGCCGCGc-UGCACCa -3'
miRNA:   3'- gaGGUGGCaGa----CGGCGCcaACGUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.