miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1569 5' -52.6 NC_001347.2 + 86339 0.66 0.995824
Target:  5'- cGCGCGUcauaaaguccucgGCuacuggcguACCGUGggcccgcagcaucuuGGCGAAGAUGCGg -3'
miRNA:   3'- -CGCGCA-------------CG---------UGGCAC---------------UCGCUUUUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 78341 0.66 0.995632
Target:  5'- cGCGCGUGguCCG--GGCGGAcccGGCGUGg -3'
miRNA:   3'- -CGCGCACguGGCacUCGCUU---UUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 1607 0.66 0.995632
Target:  5'- gGUGCGgcUGUACCGcugcaaccggcUGGGCGugGGCACc -3'
miRNA:   3'- -CGCGC--ACGUGGC-----------ACUCGCuuUUGUGc -5'
1569 5' -52.6 NC_001347.2 + 187348 0.66 0.995632
Target:  5'- gGUGCGuUGCgugGCCGUGGcGCGu---CGCGg -3'
miRNA:   3'- -CGCGC-ACG---UGGCACU-CGCuuuuGUGC- -5'
1569 5' -52.6 NC_001347.2 + 205255 0.66 0.994938
Target:  5'- aGUGCGUcGCgugagaaacaugACCGUGuuGaCGggGGCACGc -3'
miRNA:   3'- -CGCGCA-CG------------UGGCACu-C-GCuuUUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 187027 0.66 0.994938
Target:  5'- -gGUGUcCAUCGUGGGCGAAuagcagaccgcgGGCGCa -3'
miRNA:   3'- cgCGCAcGUGGCACUCGCUU------------UUGUGc -5'
1569 5' -52.6 NC_001347.2 + 76906 0.66 0.994158
Target:  5'- uGCGCGgcgauCACCGUGguaccGGUGAucACGCa -3'
miRNA:   3'- -CGCGCac---GUGGCAC-----UCGCUuuUGUGc -5'
1569 5' -52.6 NC_001347.2 + 52082 0.66 0.994158
Target:  5'- cCGCG-GC-CCGcGAGCGcauGAAACAUGa -3'
miRNA:   3'- cGCGCaCGuGGCaCUCGC---UUUUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 85524 0.66 0.994158
Target:  5'- gGCGCGcGCGCU-UGAGCGuggcccugaAGAGCGCc -3'
miRNA:   3'- -CGCGCaCGUGGcACUCGC---------UUUUGUGc -5'
1569 5' -52.6 NC_001347.2 + 74839 0.66 0.994158
Target:  5'- uCGCGUaGCACCGcc-GCGAAAGgcCGCGc -3'
miRNA:   3'- cGCGCA-CGUGGCacuCGCUUUU--GUGC- -5'
1569 5' -52.6 NC_001347.2 + 104257 0.66 0.994158
Target:  5'- cCGCGUGCgaACCGacaUGGGCGuc--CGCGu -3'
miRNA:   3'- cGCGCACG--UGGC---ACUCGCuuuuGUGC- -5'
1569 5' -52.6 NC_001347.2 + 81806 0.66 0.994158
Target:  5'- aCGUGUGCagACCGUGGaccGCGuAGACGgGa -3'
miRNA:   3'- cGCGCACG--UGGCACU---CGCuUUUGUgC- -5'
1569 5' -52.6 NC_001347.2 + 77791 0.66 0.994075
Target:  5'- cGCGCG---GCCGUGcAGCGGgccaccgAGACACa -3'
miRNA:   3'- -CGCGCacgUGGCAC-UCGCU-------UUUGUGc -5'
1569 5' -52.6 NC_001347.2 + 36301 0.66 0.993283
Target:  5'- uGCGgGgugGUGCUc-GAGCGAGAGCACu -3'
miRNA:   3'- -CGCgCa--CGUGGcaCUCGCUUUUGUGc -5'
1569 5' -52.6 NC_001347.2 + 147916 0.66 0.993283
Target:  5'- gGCGCGgugGCcuCCGUGGuCGAAGGCGu- -3'
miRNA:   3'- -CGCGCa--CGu-GGCACUcGCUUUUGUgc -5'
1569 5' -52.6 NC_001347.2 + 80192 0.66 0.993283
Target:  5'- uGCGCGUcaACCGccAGCGAGcGCACc -3'
miRNA:   3'- -CGCGCAcgUGGCacUCGCUUuUGUGc -5'
1569 5' -52.6 NC_001347.2 + 154270 0.66 0.993096
Target:  5'- uGUGCGUGaguuCCGUGAGUGGcguggugcucauGACGCc -3'
miRNA:   3'- -CGCGCACgu--GGCACUCGCUu-----------UUGUGc -5'
1569 5' -52.6 NC_001347.2 + 166285 0.66 0.992307
Target:  5'- cGCGCGuUGCACCGcGGuaaCGAcgGCGCc -3'
miRNA:   3'- -CGCGC-ACGUGGCaCUc--GCUuuUGUGc -5'
1569 5' -52.6 NC_001347.2 + 199624 0.66 0.992307
Target:  5'- cGC-CG-GCGCCGUucucggGcAGCGAGGGCACa -3'
miRNA:   3'- -CGcGCaCGUGGCA------C-UCGCUUUUGUGc -5'
1569 5' -52.6 NC_001347.2 + 77051 0.67 0.991221
Target:  5'- cGCGCGUGcCGCCGgccucgGAcgaaGCGgcAGCGgCGg -3'
miRNA:   3'- -CGCGCAC-GUGGCa-----CU----CGCuuUUGU-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.