miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1569 5' -52.6 NC_001347.2 + 193889 0.67 0.991107
Target:  5'- cGCGCGaGCccgucauGCCGcUGGGCGAAAuugaggGCGCc -3'
miRNA:   3'- -CGCGCaCG-------UGGC-ACUCGCUUU------UGUGc -5'
1569 5' -52.6 NC_001347.2 + 185130 0.67 0.990018
Target:  5'- gGCGCGaGCAgCCGccGGGCG---GCACGg -3'
miRNA:   3'- -CGCGCaCGU-GGCa-CUCGCuuuUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 44124 0.67 0.989633
Target:  5'- aCGCGUGCauGCUGcaUGGGUGGAugguacggccgggaGACGCGg -3'
miRNA:   3'- cGCGCACG--UGGC--ACUCGCUU--------------UUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 2366 0.67 0.98869
Target:  5'- gGCGCGcugGCGCUGgGAcGCGAGucGGCGCc -3'
miRNA:   3'- -CGCGCa--CGUGGCaCU-CGCUU--UUGUGc -5'
1569 5' -52.6 NC_001347.2 + 17340 0.67 0.987228
Target:  5'- cGCGCGUaugGcCGCCGgccacgaGAGCGAuGACgACGa -3'
miRNA:   3'- -CGCGCA---C-GUGGCa------CUCGCUuUUG-UGC- -5'
1569 5' -52.6 NC_001347.2 + 65817 0.67 0.987228
Target:  5'- uGCGCGUGgugAUCGUGGGCcAGGACcCGu -3'
miRNA:   3'- -CGCGCACg--UGGCACUCGcUUUUGuGC- -5'
1569 5' -52.6 NC_001347.2 + 173055 0.67 0.987228
Target:  5'- cUGCGUGCACggccaagacauUGUGcGCGAAAGCGa- -3'
miRNA:   3'- cGCGCACGUG-----------GCACuCGCUUUUGUgc -5'
1569 5' -52.6 NC_001347.2 + 141888 0.67 0.985624
Target:  5'- gGUGacCGUGC-CCGUGAGCGuggaAAAAUAUGc -3'
miRNA:   3'- -CGC--GCACGuGGCACUCGC----UUUUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 190841 0.67 0.985624
Target:  5'- cGCGCGgcauguugcGCGCCGUGAucuuGuCcGAGACGCGg -3'
miRNA:   3'- -CGCGCa--------CGUGGCACU----C-GcUUUUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 208905 0.68 0.983872
Target:  5'- cGUGCGUcCACCaccAGCGAAcGCACGa -3'
miRNA:   3'- -CGCGCAcGUGGcacUCGCUUuUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 67397 0.68 0.981961
Target:  5'- uCGCccGCGCUGUGGGCGcu-GCugGg -3'
miRNA:   3'- cGCGcaCGUGGCACUCGCuuuUGugC- -5'
1569 5' -52.6 NC_001347.2 + 29130 0.68 0.981961
Target:  5'- cGCuGCGUGCuCCGaucGGGCGGucGACugGa -3'
miRNA:   3'- -CG-CGCACGuGGCa--CUCGCUu-UUGugC- -5'
1569 5' -52.6 NC_001347.2 + 73720 0.68 0.979886
Target:  5'- cCGCGgGCACCGccgcCGGAGGCGCGg -3'
miRNA:   3'- cGCGCaCGUGGCacucGCUUUUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 158606 0.68 0.979886
Target:  5'- uGUGCGcGCGCUGUcagacGGGCGAGuacCGCGa -3'
miRNA:   3'- -CGCGCaCGUGGCA-----CUCGCUUuu-GUGC- -5'
1569 5' -52.6 NC_001347.2 + 155407 0.68 0.977638
Target:  5'- -gGCGaucgGCGCCGcUGAuUGAGGACGCGg -3'
miRNA:   3'- cgCGCa---CGUGGC-ACUcGCUUUUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 65371 0.68 0.976203
Target:  5'- cGCGcCGUGCGucugcCCGUGAGCaccgcugccgcgcccGAGGGCAUc -3'
miRNA:   3'- -CGC-GCACGU-----GGCACUCG---------------CUUUUGUGc -5'
1569 5' -52.6 NC_001347.2 + 39639 0.68 0.97521
Target:  5'- cGCcCGUGUGCCGcGGGCGAc-ACGCa -3'
miRNA:   3'- -CGcGCACGUGGCaCUCGCUuuUGUGc -5'
1569 5' -52.6 NC_001347.2 + 198904 0.69 0.972323
Target:  5'- aGCGCGccGCGCgagguguaGUGGGCGGuauagaaGAGCACGu -3'
miRNA:   3'- -CGCGCa-CGUGg-------CACUCGCU-------UUUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 74940 0.69 0.969786
Target:  5'- aGCGUGUacgucuGCGCCGgcgacacauGCGAAAGCAUGc -3'
miRNA:   3'- -CGCGCA------CGUGGCacu------CGCUUUUGUGC- -5'
1569 5' -52.6 NC_001347.2 + 174005 0.69 0.965836
Target:  5'- gGCGCG-GUcCCGUGAuggagaaaacgccgGCGGAGACgACGg -3'
miRNA:   3'- -CGCGCaCGuGGCACU--------------CGCUUUUG-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.