miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15690 3' -56.9 NC_004065.1 + 40532 0.66 0.93165
Target:  5'- --gGAGGAAgUCCUCCUcgaGC-CGCCg- -3'
miRNA:   3'- gcgCUCCUUgAGGAGGA---CGuGUGGaa -5'
15690 3' -56.9 NC_004065.1 + 64128 0.66 0.93165
Target:  5'- gGCGcagaaAGGGcuuCUCCUCCcGCugGCCg- -3'
miRNA:   3'- gCGC-----UCCUu--GAGGAGGaCGugUGGaa -5'
15690 3' -56.9 NC_004065.1 + 28947 0.66 0.926543
Target:  5'- gGCGGGGuGCUgCUUCUGCgugACugCUg -3'
miRNA:   3'- gCGCUCCuUGAgGAGGACG---UGugGAa -5'
15690 3' -56.9 NC_004065.1 + 91361 0.66 0.921207
Target:  5'- aGCGAGGcGCUCUUCUacuucaUGUuCACCUc -3'
miRNA:   3'- gCGCUCCuUGAGGAGG------ACGuGUGGAa -5'
15690 3' -56.9 NC_004065.1 + 61562 0.66 0.921207
Target:  5'- cCGagaGGGGGACggcguUCCUCUUGgACGCCg- -3'
miRNA:   3'- -GCg--CUCCUUG-----AGGAGGACgUGUGGaa -5'
15690 3' -56.9 NC_004065.1 + 109488 0.66 0.921207
Target:  5'- uCGC-AGGAGCUCCUCaUGgGCGuCCUc -3'
miRNA:   3'- -GCGcUCCUUGAGGAGgACgUGU-GGAa -5'
15690 3' -56.9 NC_004065.1 + 68432 0.66 0.915643
Target:  5'- gGCGGGGccGACagCUCCgucgcGCGCGCCg- -3'
miRNA:   3'- gCGCUCC--UUGagGAGGa----CGUGUGGaa -5'
15690 3' -56.9 NC_004065.1 + 130512 0.66 0.90985
Target:  5'- cCGCGc-GucCUCCUCgUGCGCGCCa- -3'
miRNA:   3'- -GCGCucCuuGAGGAGgACGUGUGGaa -5'
15690 3' -56.9 NC_004065.1 + 180054 0.66 0.903833
Target:  5'- uGCaGGGGGCUCCUCCU-C-UACCUg -3'
miRNA:   3'- gCGcUCCUUGAGGAGGAcGuGUGGAa -5'
15690 3' -56.9 NC_004065.1 + 62547 0.67 0.897591
Target:  5'- uGaCGAGGGAuCUUCUCCUcGC-CACCa- -3'
miRNA:   3'- gC-GCUCCUU-GAGGAGGA-CGuGUGGaa -5'
15690 3' -56.9 NC_004065.1 + 159930 0.67 0.884447
Target:  5'- gGCGAGGAGCgCCUCggGUAUGCUa- -3'
miRNA:   3'- gCGCUCCUUGaGGAGgaCGUGUGGaa -5'
15690 3' -56.9 NC_004065.1 + 25399 0.67 0.884447
Target:  5'- cCGgGAGGAACUgugagaggCCUCCccCGCGCCUc -3'
miRNA:   3'- -GCgCUCCUUGA--------GGAGGacGUGUGGAa -5'
15690 3' -56.9 NC_004065.1 + 181300 0.67 0.870448
Target:  5'- aGUGAGGAGCguucuguugUCCUguaagaUUGCACACCUc -3'
miRNA:   3'- gCGCUCCUUG---------AGGAg-----GACGUGUGGAa -5'
15690 3' -56.9 NC_004065.1 + 2067 0.68 0.863139
Target:  5'- uGCGAGGcAGCUCCUguucguuucacgCgCUGCGCGCgUa -3'
miRNA:   3'- gCGCUCC-UUGAGGA------------G-GACGUGUGgAa -5'
15690 3' -56.9 NC_004065.1 + 197423 0.68 0.863139
Target:  5'- cCGCGGGGAGCUggCgUCCcuggucgagagGCGCGCCg- -3'
miRNA:   3'- -GCGCUCCUUGA--GgAGGa----------CGUGUGGaa -5'
15690 3' -56.9 NC_004065.1 + 31967 0.68 0.847928
Target:  5'- uGCGGGGAGCUCa-CCgucaucgGCACGCUc- -3'
miRNA:   3'- gCGCUCCUUGAGgaGGa------CGUGUGGaa -5'
15690 3' -56.9 NC_004065.1 + 100956 0.68 0.831968
Target:  5'- uGC-AGGAACUUCUCCcgGCACAgCg- -3'
miRNA:   3'- gCGcUCCUUGAGGAGGa-CGUGUgGaa -5'
15690 3' -56.9 NC_004065.1 + 77093 0.69 0.815312
Target:  5'- aGCGAGGGAUcCCaggcCCUGUACAUCg- -3'
miRNA:   3'- gCGCUCCUUGaGGa---GGACGUGUGGaa -5'
15690 3' -56.9 NC_004065.1 + 224636 0.69 0.79802
Target:  5'- aCGcCGAcGGAACgccgCCacauggacaUCCUGCACACCg- -3'
miRNA:   3'- -GC-GCU-CCUUGa---GG---------AGGACGUGUGGaa -5'
15690 3' -56.9 NC_004065.1 + 50685 0.69 0.789154
Target:  5'- gGUGAGGuccaugGGCUgCUCCUGCugAUCUUc -3'
miRNA:   3'- gCGCUCC------UUGAgGAGGACGugUGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.