miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15690 5' -57.2 NC_004065.1 + 121581 0.66 0.93729
Target:  5'- cAGAGGAgacuagACGAgcccCGAGUGCggggCCGCUGc -3'
miRNA:   3'- -UCUCCUaca---UGCU----GCUCGCG----GGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 75647 0.66 0.93729
Target:  5'- gGGAGGAgGUGgaaguggagguCGGCGAgGCGgCCGCg- -3'
miRNA:   3'- -UCUCCUaCAU-----------GCUGCU-CGCgGGCGac -5'
15690 5' -57.2 NC_004065.1 + 66659 0.66 0.935881
Target:  5'- -cGGGAUGcUGCGcgucuccucggucaGCGAGCGCagCCGCUc -3'
miRNA:   3'- ucUCCUAC-AUGC--------------UGCUCGCG--GGCGAc -5'
15690 5' -57.2 NC_004065.1 + 82085 0.66 0.934452
Target:  5'- cGGuAGGAUGUcgGCGACGucgcagucgaucuccAgcuGCGCCCgGCUGa -3'
miRNA:   3'- -UC-UCCUACA--UGCUGC---------------U---CGCGGG-CGAC- -5'
15690 5' -57.2 NC_004065.1 + 120185 0.66 0.932515
Target:  5'- gAGGGGA---GCGACGccGCGCUCGCc- -3'
miRNA:   3'- -UCUCCUacaUGCUGCu-CGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 91098 0.66 0.932515
Target:  5'- aGGAGG-UGaacAUGAaguagaaGAGCGCCuCGCUGa -3'
miRNA:   3'- -UCUCCuACa--UGCUg------CUCGCGG-GCGAC- -5'
15690 5' -57.2 NC_004065.1 + 18155 0.66 0.927517
Target:  5'- aGGAGGcgacaGUcucuCGACGGGCGUCCGUc- -3'
miRNA:   3'- -UCUCCua---CAu---GCUGCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 34954 0.66 0.927517
Target:  5'- cGAGGucuucGUGCuccugGGCG-GCGCCCGCg- -3'
miRNA:   3'- uCUCCua---CAUG-----CUGCuCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 52840 0.66 0.925456
Target:  5'- uAGGGGAgagccgacgauccUGU-CGACGAGaaaggcgaagaagaCGCCCGCg- -3'
miRNA:   3'- -UCUCCU-------------ACAuGCUGCUC--------------GCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 43231 0.66 0.922297
Target:  5'- cGAGGggGUcCGGgGAgcuuucaucaaGCGCCCGCg- -3'
miRNA:   3'- uCUCCuaCAuGCUgCU-----------CGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 128377 0.66 0.922297
Target:  5'- cGGGGcuucgGCGGCGAGaGCCgGCUGu -3'
miRNA:   3'- uCUCCuaca-UGCUGCUCgCGGgCGAC- -5'
15690 5' -57.2 NC_004065.1 + 32265 0.66 0.922297
Target:  5'- --cGGAcg-GCucCGAGUGCCCGCUGu -3'
miRNA:   3'- ucuCCUacaUGcuGCUCGCGGGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 27656 0.66 0.922297
Target:  5'- uGAGGAgucgACGACGAuGC-CgCCGCUGc -3'
miRNA:   3'- uCUCCUaca-UGCUGCU-CGcG-GGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 117720 0.66 0.922297
Target:  5'- ---cGGUG-GCGGCGAGCGgCCGCg- -3'
miRNA:   3'- ucucCUACaUGCUGCUCGCgGGCGac -5'
15690 5' -57.2 NC_004065.1 + 184895 0.66 0.916853
Target:  5'- gAGAGGAUcGgga-GCGGGCGCCCGg-- -3'
miRNA:   3'- -UCUCCUA-CaugcUGCUCGCGGGCgac -5'
15690 5' -57.2 NC_004065.1 + 208712 0.66 0.911188
Target:  5'- cGGAGGAUaGcACGACGAGUagaaCCGCg- -3'
miRNA:   3'- -UCUCCUA-CaUGCUGCUCGcg--GGCGac -5'
15690 5' -57.2 NC_004065.1 + 719 0.67 0.905302
Target:  5'- cGGAGGcUGacucaGGCGAGCGCgCGuCUGg -3'
miRNA:   3'- -UCUCCuACaug--CUGCUCGCGgGC-GAC- -5'
15690 5' -57.2 NC_004065.1 + 129035 0.67 0.892879
Target:  5'- cAGAGG-UGccgccgGCGACG-GCGCCCucaacGCUGc -3'
miRNA:   3'- -UCUCCuACa-----UGCUGCuCGCGGG-----CGAC- -5'
15690 5' -57.2 NC_004065.1 + 119995 0.67 0.892879
Target:  5'- gAGcGGGUGgaagaacACGGCGGGCgguGCCgGCUGa -3'
miRNA:   3'- -UCuCCUACa------UGCUGCUCG---CGGgCGAC- -5'
15690 5' -57.2 NC_004065.1 + 177790 0.67 0.886346
Target:  5'- -uGGGGUGUugGGCGcuguuGGCGCgCGgUGg -3'
miRNA:   3'- ucUCCUACAugCUGC-----UCGCGgGCgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.