miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15690 5' -57.2 NC_004065.1 + 102496 0.79 0.315773
Target:  5'- uGAGGAUG-ACGAuguCGAGCGCCUGCa- -3'
miRNA:   3'- uCUCCUACaUGCU---GCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 117720 0.66 0.922297
Target:  5'- ---cGGUG-GCGGCGAGCGgCCGCg- -3'
miRNA:   3'- ucucCUACaUGCUGCUCGCgGGCGac -5'
15690 5' -57.2 NC_004065.1 + 118309 0.74 0.552903
Target:  5'- uGGAGGAcgaagacgUGUACGACGAGCagGgCCGcCUGa -3'
miRNA:   3'- -UCUCCU--------ACAUGCUGCUCG--CgGGC-GAC- -5'
15690 5' -57.2 NC_004065.1 + 119995 0.67 0.892879
Target:  5'- gAGcGGGUGgaagaacACGGCGGGCgguGCCgGCUGa -3'
miRNA:   3'- -UCuCCUACa------UGCUGCUCG---CGGgCGAC- -5'
15690 5' -57.2 NC_004065.1 + 120185 0.66 0.932515
Target:  5'- gAGGGGA---GCGACGccGCGCUCGCc- -3'
miRNA:   3'- -UCUCCUacaUGCUGCu-CGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 121581 0.66 0.93729
Target:  5'- cAGAGGAgacuagACGAgcccCGAGUGCggggCCGCUGc -3'
miRNA:   3'- -UCUCCUaca---UGCU----GCUCGCG----GGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 122758 0.71 0.709787
Target:  5'- cGAGGAgGUgcgcGCGGCGAcCGCCCaGCUGc -3'
miRNA:   3'- uCUCCUaCA----UGCUGCUcGCGGG-CGAC- -5'
15690 5' -57.2 NC_004065.1 + 123574 0.71 0.697202
Target:  5'- --cGGGUcgacgcccagcaucgACGACGAGCGCCCGCg- -3'
miRNA:   3'- ucuCCUAca-------------UGCUGCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 128377 0.66 0.922297
Target:  5'- cGGGGcuucgGCGGCGAGaGCCgGCUGu -3'
miRNA:   3'- uCUCCuaca-UGCUGCUCgCGGgCGAC- -5'
15690 5' -57.2 NC_004065.1 + 129035 0.67 0.892879
Target:  5'- cAGAGG-UGccgccgGCGACG-GCGCCCucaacGCUGc -3'
miRNA:   3'- -UCUCCuACa-----UGCUGCuCGCGGG-----CGAC- -5'
15690 5' -57.2 NC_004065.1 + 137011 0.69 0.793083
Target:  5'- cGAGG----GCGACGAGauCCCGCUGa -3'
miRNA:   3'- uCUCCuacaUGCUGCUCgcGGGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 146034 0.74 0.533677
Target:  5'- uGAGGAucUGU---GCGAGCGCCCGCg- -3'
miRNA:   3'- uCUCCU--ACAugcUGCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 146058 0.72 0.67081
Target:  5'- cGAGGAUGccgAgGACGAGUG-CCGCUa -3'
miRNA:   3'- uCUCCUACa--UgCUGCUCGCgGGCGAc -5'
15690 5' -57.2 NC_004065.1 + 163048 0.71 0.700115
Target:  5'- cAGuGGAccUACGA-GAGCGCCCGCg- -3'
miRNA:   3'- -UCuCCUacAUGCUgCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 167001 0.82 0.189545
Target:  5'- aAGAGGAgcUACGGCGAGCuCCCGCUGc -3'
miRNA:   3'- -UCUCCUacAUGCUGCUCGcGGGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 176381 0.68 0.858163
Target:  5'- aAGaAGGAgacgacGCGAgGAGCGCCCGUc- -3'
miRNA:   3'- -UC-UCCUaca---UGCUgCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 176619 0.72 0.651113
Target:  5'- cGAGGAUG-AUaGCGGGCGCCCGg-- -3'
miRNA:   3'- uCUCCUACaUGcUGCUCGCGGGCgac -5'
15690 5' -57.2 NC_004065.1 + 176880 0.73 0.591915
Target:  5'- cGuGGAg--GCGcCGGGCGCCCGCUa -3'
miRNA:   3'- uCuCCUacaUGCuGCUCGCGGGCGAc -5'
15690 5' -57.2 NC_004065.1 + 177790 0.67 0.886346
Target:  5'- -uGGGGUGUugGGCGcuguuGGCGCgCGgUGg -3'
miRNA:   3'- ucUCCUACAugCUGC-----UCGCGgGCgAC- -5'
15690 5' -57.2 NC_004065.1 + 184895 0.66 0.916853
Target:  5'- gAGAGGAUcGgga-GCGGGCGCCCGg-- -3'
miRNA:   3'- -UCUCCUA-CaugcUGCUCGCGGGCgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.