Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15690 | 5' | -57.2 | NC_004065.1 | + | 120185 | 0.66 | 0.932515 |
Target: 5'- gAGGGGA---GCGACGccGCGCUCGCc- -3' miRNA: 3'- -UCUCCUacaUGCUGCu-CGCGGGCGac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 119995 | 0.67 | 0.892879 |
Target: 5'- gAGcGGGUGgaagaacACGGCGGGCgguGCCgGCUGa -3' miRNA: 3'- -UCuCCUACa------UGCUGCUCG---CGGgCGAC- -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 208712 | 0.66 | 0.911188 |
Target: 5'- cGGAGGAUaGcACGACGAGUagaaCCGCg- -3' miRNA: 3'- -UCUCCUA-CaUGCUGCUCGcg--GGCGac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 184895 | 0.66 | 0.916853 |
Target: 5'- gAGAGGAUcGgga-GCGGGCGCCCGg-- -3' miRNA: 3'- -UCUCCUA-CaugcUGCUCGCGGGCgac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 32265 | 0.66 | 0.922297 |
Target: 5'- --cGGAcg-GCucCGAGUGCCCGCUGu -3' miRNA: 3'- ucuCCUacaUGcuGCUCGCGGGCGAC- -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 128377 | 0.66 | 0.922297 |
Target: 5'- cGGGGcuucgGCGGCGAGaGCCgGCUGu -3' miRNA: 3'- uCUCCuaca-UGCUGCUCgCGGgCGAC- -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 43231 | 0.66 | 0.922297 |
Target: 5'- cGAGGggGUcCGGgGAgcuuucaucaaGCGCCCGCg- -3' miRNA: 3'- uCUCCuaCAuGCUgCU-----------CGCGGGCGac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 52840 | 0.66 | 0.925456 |
Target: 5'- uAGGGGAgagccgacgauccUGU-CGACGAGaaaggcgaagaagaCGCCCGCg- -3' miRNA: 3'- -UCUCCU-------------ACAuGCUGCUC--------------GCGGGCGac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 91098 | 0.66 | 0.932515 |
Target: 5'- aGGAGG-UGaacAUGAaguagaaGAGCGCCuCGCUGa -3' miRNA: 3'- -UCUCCuACa--UGCUg------CUCGCGG-GCGAC- -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 19563 | 0.67 | 0.879603 |
Target: 5'- cGuGGGUGUcggugGCGGCGguAGCGUCgGCUGc -3' miRNA: 3'- uCuCCUACA-----UGCUGC--UCGCGGgCGAC- -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 74132 | 0.68 | 0.872656 |
Target: 5'- cGAGGAcGUcgaGGCGGGUGCCCGg-- -3' miRNA: 3'- uCUCCUaCAug-CUGCUCGCGGGCgac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 20761 | 0.68 | 0.850628 |
Target: 5'- aAGAGGGUG-AUGGCGAuCGCCCuaGCg- -3' miRNA: 3'- -UCUCCUACaUGCUGCUcGCGGG--CGac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 66519 | 0.76 | 0.424598 |
Target: 5'- --uGGAaucgcUGUGCGugGAGCGCCUGCg- -3' miRNA: 3'- ucuCCU-----ACAUGCugCUCGCGGGCGac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 74705 | 0.72 | 0.63136 |
Target: 5'- uGGGGAUGaggaaGCG-CGGGCGCCUGCg- -3' miRNA: 3'- uCUCCUACa----UGCuGCUCGCGGGCGac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 176619 | 0.72 | 0.651113 |
Target: 5'- cGAGGAUG-AUaGCGGGCGCCCGg-- -3' miRNA: 3'- uCUCCUACaUGcUGCUCGCGGGCgac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 146058 | 0.72 | 0.67081 |
Target: 5'- cGAGGAUGccgAgGACGAGUG-CCGCUa -3' miRNA: 3'- uCUCCUACa--UgCUGCUCGCgGGCGAc -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 123574 | 0.71 | 0.697202 |
Target: 5'- --cGGGUcgacgcccagcaucgACGACGAGCGCCCGCg- -3' miRNA: 3'- ucuCCUAca-------------UGCUGCUCGCGGGCGac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 163048 | 0.71 | 0.700115 |
Target: 5'- cAGuGGAccUACGA-GAGCGCCCGCg- -3' miRNA: 3'- -UCuCCUacAUGCUgCUCGCGGGCGac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 62382 | 0.7 | 0.738404 |
Target: 5'- cGGGGGUGgugGCGGCGgggguGGCGgCCGCg- -3' miRNA: 3'- uCUCCUACa--UGCUGC-----UCGCgGGCGac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 137011 | 0.69 | 0.793083 |
Target: 5'- cGAGG----GCGACGAGauCCCGCUGa -3' miRNA: 3'- uCUCCuacaUGCUGCUCgcGGGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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