miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15690 5' -57.2 NC_004065.1 + 62382 0.7 0.738404
Target:  5'- cGGGGGUGgugGCGGCGgggguGGCGgCCGCg- -3'
miRNA:   3'- uCUCCUACa--UGCUGC-----UCGCgGGCGac -5'
15690 5' -57.2 NC_004065.1 + 137011 0.69 0.793083
Target:  5'- cGAGG----GCGACGAGauCCCGCUGa -3'
miRNA:   3'- uCUCCuacaUGCUGCUCgcGGGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 20761 0.68 0.850628
Target:  5'- aAGAGGGUG-AUGGCGAuCGCCCuaGCg- -3'
miRNA:   3'- -UCUCCUACaUGCUGCUcGCGGG--CGac -5'
15690 5' -57.2 NC_004065.1 + 176381 0.68 0.858163
Target:  5'- aAGaAGGAgacgacGCGAgGAGCGCCCGUc- -3'
miRNA:   3'- -UC-UCCUaca---UGCUgCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 39114 0.68 0.865507
Target:  5'- aAGAGucUG-GCGAUGGGCGuCCCGCg- -3'
miRNA:   3'- -UCUCcuACaUGCUGCUCGC-GGGCGac -5'
15690 5' -57.2 NC_004065.1 + 177790 0.67 0.886346
Target:  5'- -uGGGGUGUugGGCGcuguuGGCGCgCGgUGg -3'
miRNA:   3'- ucUCCUACAugCUGC-----UCGCGgGCgAC- -5'
15690 5' -57.2 NC_004065.1 + 129035 0.67 0.892879
Target:  5'- cAGAGG-UGccgccgGCGACG-GCGCCCucaacGCUGc -3'
miRNA:   3'- -UCUCCuACa-----UGCUGCuCGCGGG-----CGAC- -5'
15690 5' -57.2 NC_004065.1 + 719 0.67 0.905302
Target:  5'- cGGAGGcUGacucaGGCGAGCGCgCGuCUGg -3'
miRNA:   3'- -UCUCCuACaug--CUGCUCGCGgGC-GAC- -5'
15690 5' -57.2 NC_004065.1 + 117720 0.66 0.922297
Target:  5'- ---cGGUG-GCGGCGAGCGgCCGCg- -3'
miRNA:   3'- ucucCUACaUGCUGCUCGCgGGCGac -5'
15690 5' -57.2 NC_004065.1 + 27656 0.66 0.922297
Target:  5'- uGAGGAgucgACGACGAuGC-CgCCGCUGc -3'
miRNA:   3'- uCUCCUaca-UGCUGCU-CGcG-GGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 87537 0.68 0.835011
Target:  5'- uGGGGGAUauUGCGAUcaGGGCGCCCuCUGu -3'
miRNA:   3'- -UCUCCUAc-AUGCUG--CUCGCGGGcGAC- -5'
15690 5' -57.2 NC_004065.1 + 122758 0.71 0.709787
Target:  5'- cGAGGAgGUgcgcGCGGCGAcCGCCCaGCUGc -3'
miRNA:   3'- uCUCCUaCA----UGCUGCUcGCGGG-CGAC- -5'
15690 5' -57.2 NC_004065.1 + 197398 0.71 0.709787
Target:  5'- gAGAGGcgcgcCGGCGAGCGUcugCCGCUGg -3'
miRNA:   3'- -UCUCCuacauGCUGCUCGCG---GGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 176880 0.73 0.591915
Target:  5'- cGuGGAg--GCGcCGGGCGCCCGCUa -3'
miRNA:   3'- uCuCCUacaUGCuGCUCGCGGGCGAc -5'
15690 5' -57.2 NC_004065.1 + 118309 0.74 0.552903
Target:  5'- uGGAGGAcgaagacgUGUACGACGAGCagGgCCGcCUGa -3'
miRNA:   3'- -UCUCCU--------ACAUGCUGCUCG--CgGGC-GAC- -5'
15690 5' -57.2 NC_004065.1 + 146034 0.74 0.533677
Target:  5'- uGAGGAucUGU---GCGAGCGCCCGCg- -3'
miRNA:   3'- uCUCCU--ACAugcUGCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 207019 0.75 0.495994
Target:  5'- aGGGGGAccgacgcgGUACGACuGGCGCCCGUa- -3'
miRNA:   3'- -UCUCCUa-------CAUGCUGcUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 102496 0.79 0.315773
Target:  5'- uGAGGAUG-ACGAuguCGAGCGCCUGCa- -3'
miRNA:   3'- uCUCCUACaUGCU---GCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 167001 0.82 0.189545
Target:  5'- aAGAGGAgcUACGGCGAGCuCCCGCUGc -3'
miRNA:   3'- -UCUCCUacAUGCUGCUCGcGGGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 121581 0.66 0.93729
Target:  5'- cAGAGGAgacuagACGAgcccCGAGUGCggggCCGCUGc -3'
miRNA:   3'- -UCUCCUaca---UGCU----GCUCGCG----GGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.