miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15690 5' -57.2 NC_004065.1 + 32872 1.09 0.003634
Target:  5'- aAGAGGAUGUACGACGAGCGCCCGCUGg -3'
miRNA:   3'- -UCUCCUACAUGCUGCUCGCGGGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 34954 0.66 0.927517
Target:  5'- cGAGGucuucGUGCuccugGGCG-GCGCCCGCg- -3'
miRNA:   3'- uCUCCua---CAUG-----CUGCuCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 66659 0.66 0.935881
Target:  5'- -cGGGAUGcUGCGcgucuccucggucaGCGAGCGCagCCGCUc -3'
miRNA:   3'- ucUCCUAC-AUGC--------------UGCUCGCG--GGCGAc -5'
15690 5' -57.2 NC_004065.1 + 121581 0.66 0.93729
Target:  5'- cAGAGGAgacuagACGAgcccCGAGUGCggggCCGCUGc -3'
miRNA:   3'- -UCUCCUaca---UGCU----GCUCGCG----GGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 146034 0.74 0.533677
Target:  5'- uGAGGAucUGU---GCGAGCGCCCGCg- -3'
miRNA:   3'- uCUCCU--ACAugcUGCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 118309 0.74 0.552903
Target:  5'- uGGAGGAcgaagacgUGUACGACGAGCagGgCCGcCUGa -3'
miRNA:   3'- -UCUCCU--------ACAUGCUGCUCG--CgGGC-GAC- -5'
15690 5' -57.2 NC_004065.1 + 197398 0.71 0.709787
Target:  5'- gAGAGGcgcgcCGGCGAGCGUcugCCGCUGg -3'
miRNA:   3'- -UCUCCuacauGCUGCUCGCG---GGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 122758 0.71 0.709787
Target:  5'- cGAGGAgGUgcgcGCGGCGAcCGCCCaGCUGc -3'
miRNA:   3'- uCUCCUaCA----UGCUGCUcGCGGG-CGAC- -5'
15690 5' -57.2 NC_004065.1 + 39114 0.68 0.865507
Target:  5'- aAGAGucUG-GCGAUGGGCGuCCCGCg- -3'
miRNA:   3'- -UCUCcuACaUGCUGCUCGC-GGGCGac -5'
15690 5' -57.2 NC_004065.1 + 27656 0.66 0.922297
Target:  5'- uGAGGAgucgACGACGAuGC-CgCCGCUGc -3'
miRNA:   3'- uCUCCUaca-UGCUGCU-CGcG-GGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 129035 0.67 0.892879
Target:  5'- cAGAGG-UGccgccgGCGACG-GCGCCCucaacGCUGc -3'
miRNA:   3'- -UCUCCuACa-----UGCUGCuCGCGGG-----CGAC- -5'
15690 5' -57.2 NC_004065.1 + 176381 0.68 0.858163
Target:  5'- aAGaAGGAgacgacGCGAgGAGCGCCCGUc- -3'
miRNA:   3'- -UC-UCCUaca---UGCUgCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 167001 0.82 0.189545
Target:  5'- aAGAGGAgcUACGGCGAGCuCCCGCUGc -3'
miRNA:   3'- -UCUCCUacAUGCUGCUCGcGGGCGAC- -5'
15690 5' -57.2 NC_004065.1 + 719 0.67 0.905302
Target:  5'- cGGAGGcUGacucaGGCGAGCGCgCGuCUGg -3'
miRNA:   3'- -UCUCCuACaug--CUGCUCGCGgGC-GAC- -5'
15690 5' -57.2 NC_004065.1 + 102496 0.79 0.315773
Target:  5'- uGAGGAUG-ACGAuguCGAGCGCCUGCa- -3'
miRNA:   3'- uCUCCUACaUGCU---GCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 87537 0.68 0.835011
Target:  5'- uGGGGGAUauUGCGAUcaGGGCGCCCuCUGu -3'
miRNA:   3'- -UCUCCUAc-AUGCUG--CUCGCGGGcGAC- -5'
15690 5' -57.2 NC_004065.1 + 117720 0.66 0.922297
Target:  5'- ---cGGUG-GCGGCGAGCGgCCGCg- -3'
miRNA:   3'- ucucCUACaUGCUGCUCGCgGGCGac -5'
15690 5' -57.2 NC_004065.1 + 18155 0.66 0.927517
Target:  5'- aGGAGGcgacaGUcucuCGACGGGCGUCCGUc- -3'
miRNA:   3'- -UCUCCua---CAu---GCUGCUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 207019 0.75 0.495994
Target:  5'- aGGGGGAccgacgcgGUACGACuGGCGCCCGUa- -3'
miRNA:   3'- -UCUCCUa-------CAUGCUGcUCGCGGGCGac -5'
15690 5' -57.2 NC_004065.1 + 176880 0.73 0.591915
Target:  5'- cGuGGAg--GCGcCGGGCGCCCGCUa -3'
miRNA:   3'- uCuCCUacaUGCuGCUCGCGGGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.