Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15690 | 5' | -57.2 | NC_004065.1 | + | 32265 | 0.66 | 0.922297 |
Target: 5'- --cGGAcg-GCucCGAGUGCCCGCUGu -3' miRNA: 3'- ucuCCUacaUGcuGCUCGCGGGCGAC- -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 184895 | 0.66 | 0.916853 |
Target: 5'- gAGAGGAUcGgga-GCGGGCGCCCGg-- -3' miRNA: 3'- -UCUCCUA-CaugcUGCUCGCGGGCgac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 208712 | 0.66 | 0.911188 |
Target: 5'- cGGAGGAUaGcACGACGAGUagaaCCGCg- -3' miRNA: 3'- -UCUCCUA-CaUGCUGCUCGcg--GGCGac -5' |
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15690 | 5' | -57.2 | NC_004065.1 | + | 196716 | 0.84 | 0.141231 |
Target: 5'- cGGGGGUGUacagcGCGACGucGCGCCCGCUGu -3' miRNA: 3'- uCUCCUACA-----UGCUGCu-CGCGGGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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