miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 52784 0.65 0.932671
Target:  5'- cGGCgGGGCCGCCGggggucaguaucccUUGCCu--CGGUu -3'
miRNA:   3'- -CCGgCUCGGUGGC--------------AGCGGuauGUCAu -5'
15691 3' -57.3 NC_004065.1 + 91185 0.66 0.929191
Target:  5'- cGGCCGcGGaagCGCCGUCGgCGUGCGc-- -3'
miRNA:   3'- -CCGGC-UCg--GUGGCAGCgGUAUGUcau -5'
15691 3' -57.3 NC_004065.1 + 90380 0.66 0.929191
Target:  5'- uGGCCGcggGGCCuccgGCCGgcggCGCCA-GCGGg- -3'
miRNA:   3'- -CCGGC---UCGG----UGGCa---GCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 198372 0.66 0.924029
Target:  5'- gGGCCuGAcGCgGCgCGUCGCCG-ACAGc- -3'
miRNA:   3'- -CCGG-CU-CGgUG-GCAGCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 127385 0.66 0.924029
Target:  5'- cGCCGGuagcGCCGCCGcCGCgAUGgGGg- -3'
miRNA:   3'- cCGGCU----CGGUGGCaGCGgUAUgUCau -5'
15691 3' -57.3 NC_004065.1 + 26261 0.66 0.924029
Target:  5'- cGCCGAgGCCACgGUCaGCgaCGUGCuGUAc -3'
miRNA:   3'- cCGGCU-CGGUGgCAG-CG--GUAUGuCAU- -5'
15691 3' -57.3 NC_004065.1 + 30009 0.66 0.918643
Target:  5'- aGGCUGcGCgACCGUCaCCGgcGCGGUGg -3'
miRNA:   3'- -CCGGCuCGgUGGCAGcGGUa-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 27053 0.66 0.918643
Target:  5'- gGGCUcgGAGCgACUGUCaucacGCCGUAguGUGa -3'
miRNA:   3'- -CCGG--CUCGgUGGCAG-----CGGUAUguCAU- -5'
15691 3' -57.3 NC_004065.1 + 91437 0.66 0.918643
Target:  5'- cGCCGAcggcgcuuccGCgGCCGUCGCC-UGCGa-- -3'
miRNA:   3'- cCGGCU----------CGgUGGCAGCGGuAUGUcau -5'
15691 3' -57.3 NC_004065.1 + 188226 0.66 0.918643
Target:  5'- cGGCCGcAGCUgcacccucucccGCUGUaCGCgGUACAGa- -3'
miRNA:   3'- -CCGGC-UCGG------------UGGCA-GCGgUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 35883 0.66 0.918092
Target:  5'- cGCCGAugacauccccgccGCCGCCGcCGCCGUGgAu-- -3'
miRNA:   3'- cCGGCU-------------CGGUGGCaGCGGUAUgUcau -5'
15691 3' -57.3 NC_004065.1 + 40012 0.66 0.918092
Target:  5'- cGGaCCGAGCCGCUgcggaaaGUCGCCuucguCGGc- -3'
miRNA:   3'- -CC-GGCUCGGUGG-------CAGCGGuau--GUCau -5'
15691 3' -57.3 NC_004065.1 + 36364 0.66 0.913033
Target:  5'- cGCCGgcagcGGCC-CCGUUGCCGccACGGUu -3'
miRNA:   3'- cCGGC-----UCGGuGGCAGCGGUa-UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 70295 0.66 0.913033
Target:  5'- uGGCCGucuCCACCGUgacgagcgaCGCCA-GCAGg- -3'
miRNA:   3'- -CCGGCuc-GGUGGCA---------GCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 109870 0.66 0.913033
Target:  5'- gGGCgGuGCCACCGgcgUCGCC--GCGGc- -3'
miRNA:   3'- -CCGgCuCGGUGGC---AGCGGuaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 56970 0.66 0.913033
Target:  5'- uGCUGccGCCGCCGcCGCCGcUGCGGc- -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGU-AUGUCau -5'
15691 3' -57.3 NC_004065.1 + 151426 0.66 0.913033
Target:  5'- aGGaaGGGCgGCCGgcgCGCCAgcucGCGGUc -3'
miRNA:   3'- -CCggCUCGgUGGCa--GCGGUa---UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 194805 0.67 0.90115
Target:  5'- cGUCGAGCCcCUGaaCGCCGUgGCGGUGg -3'
miRNA:   3'- cCGGCUCGGuGGCa-GCGGUA-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 83517 0.67 0.900533
Target:  5'- cGGUCGAGUacuucuuccccuaCGCCacccagacCGCCGUGCAGUAu -3'
miRNA:   3'- -CCGGCUCG-------------GUGGca------GCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 109487 0.67 0.900533
Target:  5'- cGCCGcuaccGCCGCCGucucccgUCGCCGaGCAGg- -3'
miRNA:   3'- cCGGCu----CGGUGGC-------AGCGGUaUGUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.