miRNA display CGI


Results 21 - 40 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 109753 0.67 0.874091
Target:  5'- cGCCGGGCUugCGUuucuacgCGCCGgucaGCAGg- -3'
miRNA:   3'- cCGGCUCGGugGCA-------GCGGUa---UGUCau -5'
15691 3' -57.3 NC_004065.1 + 68823 0.67 0.874793
Target:  5'- aGGUCGAGCUGCUgaaGUCGCagGUGCAcGUGc -3'
miRNA:   3'- -CCGGCUCGGUGG---CAGCGg-UAUGU-CAU- -5'
15691 3' -57.3 NC_004065.1 + 173883 0.67 0.89488
Target:  5'- cGCCGugugugugGGCCGCCGcCGCCucaacacuCGGUAg -3'
miRNA:   3'- cCGGC--------UCGGUGGCaGCGGuau-----GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 127083 0.67 0.8936
Target:  5'- cGGCacauCGAGCUuaggcagcagcuCCGUCGCCGUcCAGUu -3'
miRNA:   3'- -CCG----GCUCGGu-----------GGCAGCGGUAuGUCAu -5'
15691 3' -57.3 NC_004065.1 + 159683 0.67 0.874793
Target:  5'- -cCCGAggcgcuccucGCCGCCGUCGCCGccgAUAGa- -3'
miRNA:   3'- ccGGCU----------CGGUGGCAGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 123521 0.67 0.881698
Target:  5'- gGGuCCGGGCUGgUGUgGUCGUACAGg- -3'
miRNA:   3'- -CC-GGCUCGGUgGCAgCGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 103646 0.67 0.888395
Target:  5'- uGCgCGAGCagGCgGUCGCCGUGCGc-- -3'
miRNA:   3'- cCG-GCUCGg-UGgCAGCGGUAUGUcau -5'
15691 3' -57.3 NC_004065.1 + 109487 0.67 0.900533
Target:  5'- cGCCGcuaccGCCGCCGucucccgUCGCCGaGCAGg- -3'
miRNA:   3'- cCGGCu----CGGUGGC-------AGCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 134234 0.67 0.888395
Target:  5'- gGGCaCGGGCC-CCGgcCGCCgAUAUAGg- -3'
miRNA:   3'- -CCG-GCUCGGuGGCa-GCGG-UAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 62721 0.67 0.867685
Target:  5'- cGGCCGcuCCuGCCGUCGCCgGUGCu--- -3'
miRNA:   3'- -CCGGCucGG-UGGCAGCGG-UAUGucau -5'
15691 3' -57.3 NC_004065.1 + 43634 0.67 0.874793
Target:  5'- uGGUCGGGCCGCCGauacgUCGUCGacuCGGa- -3'
miRNA:   3'- -CCGGCUCGGUGGC-----AGCGGUau-GUCau -5'
15691 3' -57.3 NC_004065.1 + 113445 0.67 0.881698
Target:  5'- gGGC--AGCCGCUGUCGuCCAUGCGc-- -3'
miRNA:   3'- -CCGgcUCGGUGGCAGC-GGUAUGUcau -5'
15691 3' -57.3 NC_004065.1 + 116395 0.67 0.881698
Target:  5'- cGGCCccGAGCCGCCGcaggaCGCCGacCAGc- -3'
miRNA:   3'- -CCGG--CUCGGUGGCa----GCGGUauGUCau -5'
15691 3' -57.3 NC_004065.1 + 201047 0.67 0.867685
Target:  5'- cGCCGAGaCGCCGUCGCCc------- -3'
miRNA:   3'- cCGGCUCgGUGGCAGCGGuaugucau -5'
15691 3' -57.3 NC_004065.1 + 118421 0.67 0.89488
Target:  5'- aGCCGugacGGCCGCCGcCGCgGUcuCGGUGa -3'
miRNA:   3'- cCGGC----UCGGUGGCaGCGgUAu-GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 97020 0.67 0.89488
Target:  5'- cGGCCGcgauGCCgccuccGCCGUCGCCcUGCu--- -3'
miRNA:   3'- -CCGGCu---CGG------UGGCAGCGGuAUGucau -5'
15691 3' -57.3 NC_004065.1 + 115948 0.67 0.888395
Target:  5'- aGCCauggGAGUCgACaagGUCGCCGUGCAGUu -3'
miRNA:   3'- cCGG----CUCGG-UGg--CAGCGGUAUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 83517 0.67 0.900533
Target:  5'- cGGUCGAGUacuucuuccccuaCGCCacccagacCGCCGUGCAGUAu -3'
miRNA:   3'- -CCGGCUCG-------------GUGGca------GCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 61075 0.68 0.860378
Target:  5'- aGGCCGuuGGUCACCauGUCGCagauguCGUGCAGg- -3'
miRNA:   3'- -CCGGC--UCGGUGG--CAGCG------GUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 229157 0.68 0.845191
Target:  5'- cGGCgGGG-CGCCcUCGCCcgGCAGUc -3'
miRNA:   3'- -CCGgCUCgGUGGcAGCGGuaUGUCAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.