Results 61 - 80 of 92 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 154176 | 0.69 | 0.768684 |
Target: 5'- cGGCUGuugcuGGCuCGCCGUCGCCAUcucGCAu-- -3' miRNA: 3'- -CCGGC-----UCG-GUGGCAGCGGUA---UGUcau -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 116095 | 0.7 | 0.759507 |
Target: 5'- cGGCCGAGCuCAUCcggcgaggggugGUCGCCGga-GGUAg -3' miRNA: 3'- -CCGGCUCG-GUGG------------CAGCGGUaugUCAU- -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 48356 | 0.7 | 0.721827 |
Target: 5'- cGCCGccGCCACCGcCGCCGccACAGg- -3' miRNA: 3'- cCGGCu-CGGUGGCaGCGGUa-UGUCau -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 138819 | 0.7 | 0.750225 |
Target: 5'- aGCgGAcGgCACCGUCGCCGU-CAGUc -3' miRNA: 3'- cCGgCU-CgGUGGCAGCGGUAuGUCAu -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 109448 | 0.7 | 0.740845 |
Target: 5'- aGGCCGAGgCGCCGcCGCCGg------ -3' miRNA: 3'- -CCGGCUCgGUGGCaGCGGUaugucau -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 151167 | 0.7 | 0.750225 |
Target: 5'- cGCCgGAGCCGCCGUCGgaccccuuguuCCcgACGGa- -3' miRNA: 3'- cCGG-CUCGGUGGCAGC-----------GGuaUGUCau -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 22802 | 0.71 | 0.682991 |
Target: 5'- -aCCG-GCCACCGUCGCUAUcuUAGUGc -3' miRNA: 3'- ccGGCuCGGUGGCAGCGGUAu-GUCAU- -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 149240 | 0.71 | 0.682991 |
Target: 5'- cGCCGccGCCGCCGUCGCC-UGCu--- -3' miRNA: 3'- cCGGCu-CGGUGGCAGCGGuAUGucau -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 25595 | 0.71 | 0.712205 |
Target: 5'- cGGCUGAGCagcagGCCGaUCucgauggggccuGCCGUGCAGUGa -3' miRNA: 3'- -CCGGCUCGg----UGGC-AG------------CGGUAUGUCAU- -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 25111 | 0.71 | 0.682991 |
Target: 5'- cGUCGAgGCCGCCGUCGCCGccaacauCGGg- -3' miRNA: 3'- cCGGCU-CGGUGGCAGCGGUau-----GUCau -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 20983 | 0.71 | 0.712206 |
Target: 5'- cGCCGugaucGCCGUCGUCGCCGU-CGGUGc -3' miRNA: 3'- cCGGCu----CGGUGGCAGCGGUAuGUCAU- -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 21958 | 0.72 | 0.603917 |
Target: 5'- cGGCCaGGGCCGUCGUCGgCAggACGGUGa -3' miRNA: 3'- -CCGG-CUCGGUGGCAGCgGUa-UGUCAU- -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 36183 | 0.72 | 0.613806 |
Target: 5'- cGGCCgcgacaGAGCaccgaACgGUCGCCAUGCGGg- -3' miRNA: 3'- -CCGG------CUCGg----UGgCAGCGGUAUGUCau -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 201335 | 0.72 | 0.653422 |
Target: 5'- aGCCGccGCCuCCGUCGCCGgagGCGGg- -3' miRNA: 3'- cCGGCu-CGGuGGCAGCGGUa--UGUCau -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 136552 | 0.73 | 0.584204 |
Target: 5'- aGGCC--GCCACCGUCaCUAUGCAGg- -3' miRNA: 3'- -CCGGcuCGGUGGCAGcGGUAUGUCau -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 176431 | 0.73 | 0.553923 |
Target: 5'- uGCCuccGCCGCCGUCGCCAUcgucucaGCAGa- -3' miRNA: 3'- cCGGcu-CGGUGGCAGCGGUA-------UGUCau -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 108763 | 0.73 | 0.553923 |
Target: 5'- cGGCCGAGCCgucGCgGUCGUCGacgaggaccacgaUGCAGUc -3' miRNA: 3'- -CCGGCUCGG---UGgCAGCGGU-------------AUGUCAu -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 125078 | 0.73 | 0.583222 |
Target: 5'- aGGCgGAGCCGCUGUucguggaCGCCcgGCGGa- -3' miRNA: 3'- -CCGgCUCGGUGGCA-------GCGGuaUGUCau -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 170257 | 0.73 | 0.594048 |
Target: 5'- uGGCCGuGGCCGCCGcCGCCAccauCGGc- -3' miRNA: 3'- -CCGGC-UCGGUGGCaGCGGUau--GUCau -5' |
|||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 88405 | 0.73 | 0.584204 |
Target: 5'- cGCCGAGCCGCCacCGCCGgcaGCGGa- -3' miRNA: 3'- cCGGCUCGGUGGcaGCGGUa--UGUCau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home