miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 33976 1.08 0.003798
Target:  5'- gGGCCGAGCCACCGUCGCCAUACAGUAc -3'
miRNA:   3'- -CCGGCUCGGUGGCAGCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 33683 0.8 0.258289
Target:  5'- aGGCCGAGCgAUCGUaGCCGUACAGc- -3'
miRNA:   3'- -CCGGCUCGgUGGCAgCGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 100004 0.79 0.29616
Target:  5'- cGUCGuAGCCGCCGcCGCCGUACAGc- -3'
miRNA:   3'- cCGGC-UCGGUGGCaGCGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 163431 0.76 0.434654
Target:  5'- cGCCGcGGUgGCCGcCGCCGUGCAGUc -3'
miRNA:   3'- cCGGC-UCGgUGGCaGCGGUAUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 186240 0.76 0.416642
Target:  5'- gGGuCCGAGCCgaagugcaauccaGCUugaagGUCGCCAUGCAGUGg -3'
miRNA:   3'- -CC-GGCUCGG-------------UGG-----CAGCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 110847 0.75 0.461148
Target:  5'- gGGCgCGGGCCgcccgcgucgaACCGUCGCCAUGCcGa- -3'
miRNA:   3'- -CCG-GCUCGG-----------UGGCAGCGGUAUGuCau -5'
15691 3' -57.3 NC_004065.1 + 165890 0.74 0.51653
Target:  5'- aGGCCGcacgcGCUGCCGUCGUgGUACGGa- -3'
miRNA:   3'- -CCGGCu----CGGUGGCAGCGgUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 42454 0.74 0.507102
Target:  5'- aGCCGAGaCGCgGUCGCCAUGCuGg- -3'
miRNA:   3'- cCGGCUCgGUGgCAGCGGUAUGuCau -5'
15691 3' -57.3 NC_004065.1 + 108763 0.73 0.553923
Target:  5'- cGGCCGAGCCgucGCgGUCGUCGacgaggaccacgaUGCAGUc -3'
miRNA:   3'- -CCGGCUCGG---UGgCAGCGGU-------------AUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 125078 0.73 0.583222
Target:  5'- aGGCgGAGCCGCUGUucguggaCGCCcgGCGGa- -3'
miRNA:   3'- -CCGgCUCGGUGGCA-------GCGGuaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 170257 0.73 0.594048
Target:  5'- uGGCCGuGGCCGCCGcCGCCAccauCGGc- -3'
miRNA:   3'- -CCGGC-UCGGUGGCaGCGGUau--GUCau -5'
15691 3' -57.3 NC_004065.1 + 88405 0.73 0.584204
Target:  5'- cGCCGAGCCGCCacCGCCGgcaGCGGa- -3'
miRNA:   3'- cCGGCUCGGUGGcaGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 136552 0.73 0.584204
Target:  5'- aGGCC--GCCACCGUCaCUAUGCAGg- -3'
miRNA:   3'- -CCGGcuCGGUGGCAGcGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 126900 0.73 0.574394
Target:  5'- cGCgUGAGCCGCCGUCGCCA-ACGc-- -3'
miRNA:   3'- cCG-GCUCGGUGGCAGCGGUaUGUcau -5'
15691 3' -57.3 NC_004065.1 + 37221 0.73 0.564621
Target:  5'- cGCCcaGAcGCCGCCGUCuCCAUGCAGg- -3'
miRNA:   3'- cCGG--CU-CGGUGGCAGcGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 162389 0.73 0.564621
Target:  5'- cGCuCGAcGCCACCGgcaucucgaaCGCCGUACGGUGc -3'
miRNA:   3'- cCG-GCU-CGGUGGCa---------GCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 195432 0.73 0.554893
Target:  5'- cGCCGcGUCGCCGUCGUCGgACAGg- -3'
miRNA:   3'- cCGGCuCGGUGGCAGCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 176431 0.73 0.553923
Target:  5'- uGCCuccGCCGCCGUCGCCAUcgucucaGCAGa- -3'
miRNA:   3'- cCGGcu-CGGUGGCAGCGGUA-------UGUCau -5'
15691 3' -57.3 NC_004065.1 + 21958 0.72 0.603917
Target:  5'- cGGCCaGGGCCGUCGUCGgCAggACGGUGa -3'
miRNA:   3'- -CCGG-CUCGGUGGCAGCgGUa-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 36183 0.72 0.613806
Target:  5'- cGGCCgcgacaGAGCaccgaACgGUCGCCAUGCGGg- -3'
miRNA:   3'- -CCGG------CUCGg----UGgCAGCGGUAUGUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.