miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 21958 0.72 0.603917
Target:  5'- cGGCCaGGGCCGUCGUCGgCAggACGGUGa -3'
miRNA:   3'- -CCGG-CUCGGUGGCAGCgGUa-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 25111 0.71 0.682991
Target:  5'- cGUCGAgGCCGCCGUCGCCGccaacauCGGg- -3'
miRNA:   3'- cCGGCU-CGGUGGCAGCGGUau-----GUCau -5'
15691 3' -57.3 NC_004065.1 + 20983 0.71 0.712206
Target:  5'- cGCCGugaucGCCGUCGUCGCCGU-CGGUGc -3'
miRNA:   3'- cCGGCu----CGGUGGCAGCGGUAuGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 25595 0.71 0.712205
Target:  5'- cGGCUGAGCagcagGCCGaUCucgauggggccuGCCGUGCAGUGa -3'
miRNA:   3'- -CCGGCUCGg----UGGC-AG------------CGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 149240 0.71 0.682991
Target:  5'- cGCCGccGCCGCCGUCGCC-UGCu--- -3'
miRNA:   3'- cCGGCu-CGGUGGCAGCGGuAUGucau -5'
15691 3' -57.3 NC_004065.1 + 22802 0.71 0.682991
Target:  5'- -aCCG-GCCACCGUCGCUAUcuUAGUGc -3'
miRNA:   3'- ccGGCuCGGUGGCAGCGGUAu-GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 48356 0.7 0.721827
Target:  5'- cGCCGccGCCACCGcCGCCGccACAGg- -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUa-UGUCau -5'
15691 3' -57.3 NC_004065.1 + 116095 0.7 0.759507
Target:  5'- cGGCCGAGCuCAUCcggcgaggggugGUCGCCGga-GGUAg -3'
miRNA:   3'- -CCGGCUCG-GUGG------------CAGCGGUaugUCAU- -5'
15691 3' -57.3 NC_004065.1 + 151167 0.7 0.750225
Target:  5'- cGCCgGAGCCGCCGUCGgaccccuuguuCCcgACGGa- -3'
miRNA:   3'- cCGG-CUCGGUGGCAGC-----------GGuaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 138819 0.7 0.750225
Target:  5'- aGCgGAcGgCACCGUCGCCGU-CAGUc -3'
miRNA:   3'- cCGgCU-CgGUGGCAGCGGUAuGUCAu -5'
15691 3' -57.3 NC_004065.1 + 109448 0.7 0.740845
Target:  5'- aGGCCGAGgCGCCGcCGCCGg------ -3'
miRNA:   3'- -CCGGCUCgGUGGCaGCGGUaugucau -5'
15691 3' -57.3 NC_004065.1 + 126160 0.69 0.795498
Target:  5'- uGCCGAGCgGCCGg-GCC-UACAGc- -3'
miRNA:   3'- cCGGCUCGgUGGCagCGGuAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 154176 0.69 0.768684
Target:  5'- cGGCUGuugcuGGCuCGCCGUCGCCAUcucGCAu-- -3'
miRNA:   3'- -CCGGC-----UCG-GUGGCAGCGGUA---UGUcau -5'
15691 3' -57.3 NC_004065.1 + 147643 0.69 0.777747
Target:  5'- cGGgCGAGaucgaCugCGUCGCCAUcaaGCAGg- -3'
miRNA:   3'- -CCgGCUCg----GugGCAGCGGUA---UGUCau -5'
15691 3' -57.3 NC_004065.1 + 109921 0.69 0.80417
Target:  5'- cGCCGcGGCCGCCGUCGCguccCGGg- -3'
miRNA:   3'- cCGGC-UCGGUGGCAGCGguauGUCau -5'
15691 3' -57.3 NC_004065.1 + 115160 0.69 0.812695
Target:  5'- cGGCCGGcGgCACCGUCGUCGc-CAGg- -3'
miRNA:   3'- -CCGGCU-CgGUGGCAGCGGUauGUCau -5'
15691 3' -57.3 NC_004065.1 + 127523 0.69 0.795497
Target:  5'- uGCCGccugcucaugGGCC-CCGUCGCCGUGCc--- -3'
miRNA:   3'- cCGGC----------UCGGuGGCAGCGGUAUGucau -5'
15691 3' -57.3 NC_004065.1 + 168824 0.69 0.786687
Target:  5'- gGGCCGAGacgcCCGCUGUCGCCGc------ -3'
miRNA:   3'- -CCGGCUC----GGUGGCAGCGGUaugucau -5'
15691 3' -57.3 NC_004065.1 + 56372 0.69 0.812696
Target:  5'- aGGCgaGcGCCGCCGUCGuCCGggACGGUc -3'
miRNA:   3'- -CCGg-CuCGGUGGCAGC-GGUa-UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 162522 0.68 0.860378
Target:  5'- cGCaCGAGCCGCCGg-GCCAggucucggACGGg- -3'
miRNA:   3'- cCG-GCUCGGUGGCagCGGUa-------UGUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.