miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 61075 0.68 0.860378
Target:  5'- aGGCCGuuGGUCACCauGUCGCagauguCGUGCAGg- -3'
miRNA:   3'- -CCGGC--UCGGUGG--CAGCG------GUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 125871 0.68 0.826833
Target:  5'- cGGCCGuGuCCACCaGUuugaucuuguucucCGCCGUGCuGUAg -3'
miRNA:   3'- -CCGGCuC-GGUGG-CA--------------GCGGUAUGuCAU- -5'
15691 3' -57.3 NC_004065.1 + 57767 0.68 0.821068
Target:  5'- cGUCGccGCCGCCGUCGCUcu-CGGUGg -3'
miRNA:   3'- cCGGCu-CGGUGGCAGCGGuauGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 162522 0.68 0.860378
Target:  5'- cGCaCGAGCCGCCGg-GCCAggucucggACGGg- -3'
miRNA:   3'- cCG-GCUCGGUGGCagCGGUa-------UGUCau -5'
15691 3' -57.3 NC_004065.1 + 103759 0.68 0.837323
Target:  5'- cGGCgGGGCCuccggACCGUCGCgCA-GCAGc- -3'
miRNA:   3'- -CCGgCUCGG-----UGGCAGCG-GUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 39269 0.68 0.845191
Target:  5'- aGGCC--GCCACCGUCcCCAU-CAGa- -3'
miRNA:   3'- -CCGGcuCGGUGGCAGcGGUAuGUCau -5'
15691 3' -57.3 NC_004065.1 + 229157 0.68 0.845191
Target:  5'- cGGCgGGG-CGCCcUCGCCcgGCAGUc -3'
miRNA:   3'- -CCGgCUCgGUGGcAGCGGuaUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 99378 0.68 0.837323
Target:  5'- cGGCCGcaCCugCGUUGCCGUcaaACGGg- -3'
miRNA:   3'- -CCGGCucGGugGCAGCGGUA---UGUCau -5'
15691 3' -57.3 NC_004065.1 + 86988 0.68 0.852879
Target:  5'- gGGCCGAGgCGgCGUCggggGCCGggGCAGg- -3'
miRNA:   3'- -CCGGCUCgGUgGCAG----CGGUa-UGUCau -5'
15691 3' -57.3 NC_004065.1 + 19823 0.68 0.852879
Target:  5'- aGCCGAcGCUACCGcCGCCAccgACAc-- -3'
miRNA:   3'- cCGGCU-CGGUGGCaGCGGUa--UGUcau -5'
15691 3' -57.3 NC_004065.1 + 138392 0.68 0.821068
Target:  5'- cGCCG-GCCGCUGUaGCCAUGCu--- -3'
miRNA:   3'- cCGGCuCGGUGGCAgCGGUAUGucau -5'
15691 3' -57.3 NC_004065.1 + 164354 0.68 0.82928
Target:  5'- cGGUCucGGUUACCGUCGCCGUACc--- -3'
miRNA:   3'- -CCGGc-UCGGUGGCAGCGGUAUGucau -5'
15691 3' -57.3 NC_004065.1 + 30225 0.68 0.82928
Target:  5'- uGCCGccGCCGCCGcCGCCAgcacCGGUc -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUau--GUCAu -5'
15691 3' -57.3 NC_004065.1 + 163739 0.68 0.82928
Target:  5'- aGCCGccGCCACCGgCGCCGccgACGGa- -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 195392 0.67 0.867685
Target:  5'- cGGCCGAGgucuuCCACgGcgaGCCGUACAcGUAc -3'
miRNA:   3'- -CCGGCUC-----GGUGgCag-CGGUAUGU-CAU- -5'
15691 3' -57.3 NC_004065.1 + 124472 0.67 0.867685
Target:  5'- cGCCGuGCCGCUG-CGCCGggucCAGg- -3'
miRNA:   3'- cCGGCuCGGUGGCaGCGGUau--GUCau -5'
15691 3' -57.3 NC_004065.1 + 173883 0.67 0.89488
Target:  5'- cGCCGugugugugGGCCGCCGcCGCCucaacacuCGGUAg -3'
miRNA:   3'- cCGGC--------UCGGUGGCaGCGGuau-----GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 194805 0.67 0.90115
Target:  5'- cGUCGAGCCcCUGaaCGCCGUgGCGGUGg -3'
miRNA:   3'- cCGGCUCGGuGGCa-GCGGUA-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 127083 0.67 0.8936
Target:  5'- cGGCacauCGAGCUuaggcagcagcuCCGUCGCCGUcCAGUu -3'
miRNA:   3'- -CCG----GCUCGGu-----------GGCAGCGGUAuGUCAu -5'
15691 3' -57.3 NC_004065.1 + 103646 0.67 0.888395
Target:  5'- uGCgCGAGCagGCgGUCGCCGUGCGc-- -3'
miRNA:   3'- cCG-GCUCGg-UGgCAGCGGUAUGUcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.