miRNA display CGI


Results 61 - 80 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 134234 0.67 0.888395
Target:  5'- gGGCaCGGGCC-CCGgcCGCCgAUAUAGg- -3'
miRNA:   3'- -CCG-GCUCGGuGGCa-GCGG-UAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 115948 0.67 0.888395
Target:  5'- aGCCauggGAGUCgACaagGUCGCCGUGCAGUu -3'
miRNA:   3'- cCGG----CUCGG-UGg--CAGCGGUAUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 118421 0.67 0.89488
Target:  5'- aGCCGugacGGCCGCCGcCGCgGUcuCGGUGa -3'
miRNA:   3'- cCGGC----UCGGUGGCaGCGgUAu-GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 97020 0.67 0.89488
Target:  5'- cGGCCGcgauGCCgccuccGCCGUCGCCcUGCu--- -3'
miRNA:   3'- -CCGGCu---CGG------UGGCAGCGGuAUGucau -5'
15691 3' -57.3 NC_004065.1 + 103646 0.67 0.888395
Target:  5'- uGCgCGAGCagGCgGUCGCCGUGCGc-- -3'
miRNA:   3'- cCG-GCUCGg-UGgCAGCGGUAUGUcau -5'
15691 3' -57.3 NC_004065.1 + 83517 0.67 0.900533
Target:  5'- cGGUCGAGUacuucuuccccuaCGCCacccagacCGCCGUGCAGUAu -3'
miRNA:   3'- -CCGGCUCG-------------GUGGca------GCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 123521 0.67 0.881698
Target:  5'- gGGuCCGGGCUGgUGUgGUCGUACAGg- -3'
miRNA:   3'- -CC-GGCUCGGUgGCAgCGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 159683 0.67 0.874793
Target:  5'- -cCCGAggcgcuccucGCCGCCGUCGCCGccgAUAGa- -3'
miRNA:   3'- ccGGCU----------CGGUGGCAGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 68823 0.67 0.874793
Target:  5'- aGGUCGAGCUGCUgaaGUCGCagGUGCAcGUGc -3'
miRNA:   3'- -CCGGCUCGGUGG---CAGCGg-UAUGU-CAU- -5'
15691 3' -57.3 NC_004065.1 + 109753 0.67 0.874091
Target:  5'- cGCCGGGCUugCGUuucuacgCGCCGgucaGCAGg- -3'
miRNA:   3'- cCGGCUCGGugGCA-------GCGGUa---UGUCau -5'
15691 3' -57.3 NC_004065.1 + 124472 0.67 0.867685
Target:  5'- cGCCGuGCCGCUG-CGCCGggucCAGg- -3'
miRNA:   3'- cCGGCuCGGUGGCaGCGGUau--GUCau -5'
15691 3' -57.3 NC_004065.1 + 195392 0.67 0.867685
Target:  5'- cGGCCGAGgucuuCCACgGcgaGCCGUACAcGUAc -3'
miRNA:   3'- -CCGGCUC-----GGUGgCag-CGGUAUGU-CAU- -5'
15691 3' -57.3 NC_004065.1 + 127083 0.67 0.8936
Target:  5'- cGGCacauCGAGCUuaggcagcagcuCCGUCGCCGUcCAGUu -3'
miRNA:   3'- -CCG----GCUCGGu-----------GGCAGCGGUAuGUCAu -5'
15691 3' -57.3 NC_004065.1 + 173883 0.67 0.89488
Target:  5'- cGCCGugugugugGGCCGCCGcCGCCucaacacuCGGUAg -3'
miRNA:   3'- cCGGC--------UCGGUGGCaGCGGuau-----GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 194805 0.67 0.90115
Target:  5'- cGUCGAGCCcCUGaaCGCCGUgGCGGUGg -3'
miRNA:   3'- cCGGCUCGGuGGCa-GCGGUA-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 70295 0.66 0.913033
Target:  5'- uGGCCGucuCCACCGUgacgagcgaCGCCA-GCAGg- -3'
miRNA:   3'- -CCGGCuc-GGUGGCA---------GCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 151426 0.66 0.913033
Target:  5'- aGGaaGGGCgGCCGgcgCGCCAgcucGCGGUc -3'
miRNA:   3'- -CCggCUCGgUGGCa--GCGGUa---UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 91185 0.66 0.929191
Target:  5'- cGGCCGcGGaagCGCCGUCGgCGUGCGc-- -3'
miRNA:   3'- -CCGGC-UCg--GUGGCAGCgGUAUGUcau -5'
15691 3' -57.3 NC_004065.1 + 30009 0.66 0.918643
Target:  5'- aGGCUGcGCgACCGUCaCCGgcGCGGUGg -3'
miRNA:   3'- -CCGGCuCGgUGGCAGcGGUa-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 56970 0.66 0.913033
Target:  5'- uGCUGccGCCGCCGcCGCCGcUGCGGc- -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGU-AUGUCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.